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RPLP0 ribosomal protein lateral stalk subunit P0 [ Sus scrofa (pig) ]

Gene ID: 100049695, updated on 17-Aug-2024

Summary

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Official Symbol
RPLP0provided by VGNC
Official Full Name
ribosomal protein lateral stalk subunit P0provided by VGNC
Primary source
VGNC:VGNC:111137
See related
Ensembl:ENSSSCG00000036014
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Annotation information
Annotation category: partial on reference assembly
Expression
Ubiquitous expression in spleen (RPKM 1508.4), ovary (RPKM 1275.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RPLP0 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (40219196..40223943, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (120957731..120959417, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene BICD family like cargo adaptor 1 Neighboring gene RAB35, member RAS oncogene family Neighboring gene GCN1 activator of EIF2AK4 Neighboring gene paxillin Neighboring gene uncharacterized LOC102165911 Neighboring gene sirtuin 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Characterization of the full-length cDNA, chromosomal localization, and polymorphism of the porcine RPLP0 gene. Wu X, et al. J Genet Genomics, 2007 Feb. PMID 17469782
  2. Evaluation and characterization of a porcine small intestine cDNA library: analysis of 839 clones. Wintero AK, et al. Mamm Genome, 1996 Jul. PMID 8672129
  3. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  4. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables large ribosomal subunit rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal large subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
large ribosomal subunit protein uL10
Names
60S acidic ribosomal protein P0
60S ribosomal protein L10E
L10E
ribosomal phosphoprotein large PO subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098598.1 → NP_001092068.1  large ribosomal subunit protein uL10

    See identical proteins and their annotated locations for NP_001092068.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ316319
    UniProtKB/Swiss-Prot
    A5X2G5, Q29214
    UniProtKB/TrEMBL
    A0A8D0U6T9
    Related
    ENSSSCP00000044506.3, ENSSSCT00000043457.3
    Conserved Domains (3) summary
    cd05795
    Location:9 → 182
    Ribosomal_P0_L10e; Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk ...
    PTZ00135
    Location:1 → 318
    PTZ00135; 60S acidic ribosomal protein P0; Provisional
    pfam00428
    Location:232 → 317
    Ribosomal_60s; 60s Acidic ribosomal protein

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    40219196..40223943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q29214.2 GenPept UniProtKB/Swiss-Prot:Q29214

Gene LinkOut

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