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st8sia5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 100049383, updated on 8-Mar-2024

Summary

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Gene symbol
st8sia5
Gene description
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
See related
EnsemblRapid:ENSORLG00000005048
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
siat8e
Orthologs
human zebrafish all
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Genomic context

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See st8sia5 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 12 NC_019870.2 (8748021..8761174, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 12 NC_019870.1 (7890097..7902752, complement)

Chromosome 12 - NC_019870.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111948347 Neighboring gene arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2Ca Neighboring gene lipoxygenase homology PLAT domains 1a Neighboring gene small nucleolar RNA SNORD72 Neighboring gene prostaglandin G/H synthase 1 Neighboring gene ribosomal protein L37

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The animal sialyltransferases and sialyltransferase-related genes: a phylogenetic approach. Harduin-Lepers A, et al. Glycobiology, 2005 Aug. PMID 15843597
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-2,8-sialyltransferase 8E
Names
alpha 2,8 sialyltransferase
NP_001098244.1
XP_011479684.1
XP_020563039.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001104774.1 → NP_001098244.1  alpha-2,8-sialyltransferase 8E

    See identical proteins and their annotated locations for NP_001098244.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ871609
    UniProtKB/TrEMBL
    H2LK12, Q5K019
    Related
    ENSORLP00000006361.3, ENSORLT00000006362.3
    Conserved Domains (1) summary
    pfam00777
    Location:121 → 374
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019870.2 Reference ASM223467v1 Primary Assembly

    Range
    8748021..8761174 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020707380.2 → XP_020563039.1  alpha-2,8-sialyltransferase 8E isoform X1

    UniProtKB/TrEMBL
    A0A3P9KDF5
    Related
    ENSORLP00000056059.1, ENSORLT00000091678.1
    Conserved Domains (1) summary
    pfam00777
    Location:192 → 445
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_011481382.2 → XP_011479684.1  alpha-2,8-sialyltransferase 8E isoform X2

    UniProtKB/TrEMBL
    A0A3B3HAL6, A0A3P9KDP9
    Related
    ENSORLP00000028964.1, ENSORLT00000044992.2
    Conserved Domains (1) summary
    pfam00777
    Location:160 → 413
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
Heading Accession and Version

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