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st6gal2a ST6 beta-galactosamide alpha-2,6-sialyltranferase 2a [ Oryzias latipes (Japanese medaka) ]

Gene ID: 100049381, updated on 8-Mar-2024

Summary

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Gene symbol
st6gal2a
Gene description
ST6 beta-galactosamide alpha-2,6-sialyltranferase 2a
See related
EnsemblRapid:ENSORLG00000012556
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Also known as
siat2; st6gal2
Orthologs
human zebrafish all
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Genomic context

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See st6gal2a in Genome Data Viewer
Location:
chromosome: 21
Exon count:
8
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 21 NC_019879.2 (10506149..10566614, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 21 NC_019879.1 (9734736..9796044, complement)

Chromosome 21 - NC_019879.2Genomic Context describing neighboring genes Neighboring gene ECRG4 augurin precursor a Neighboring gene UDP-glucuronate decarboxylase 1 Neighboring gene teleost multiple tissue opsin 2b Neighboring gene uncharacterized LOC110017350 Neighboring gene uncharacterized LOC111946733 Neighboring gene junctional adhesion molecule 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The animal sialyltransferases and sialyltransferase-related genes: a phylogenetic approach. Harduin-Lepers A, et al. Glycobiology, 2005 Aug. PMID 15843597
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-galactoside alpha-2,6-sialyltransferase 2
Names
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,6-sialyltransferase 2
ST6 beta-galactoside alpha-2,6-sialyltransferase 2
ST6Gal II
ST6GalII
alpha 2,6 sialyltransferase II
alpha 2,6-ST 2
sialyltransferase 2
NP_001098242.1
XP_011487504.1
XP_020568472.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001104772.1 → NP_001098242.1  beta-galactoside alpha-2,6-sialyltransferase 2

    See identical proteins and their annotated locations for NP_001098242.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ871601
    UniProtKB/Swiss-Prot
    Q5K027
    UniProtKB/TrEMBL
    A0A3P9JD33
    Conserved Domains (1) summary
    pfam00777
    Location:274 → 499
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019879.2 Reference ASM223467v1 Primary Assembly

    Range
    10506149..10566614 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011489202.3 → XP_011487504.1  beta-galactoside alpha-2,6-sialyltransferase 2 isoform X1

    See identical proteins and their annotated locations for XP_011487504.1

    UniProtKB/Swiss-Prot
    Q5K027
    UniProtKB/TrEMBL
    A0A3P9JD33
    Related
    ENSORLP00000015721.2, ENSORLT00000015722.3
    Conserved Domains (1) summary
    pfam00777
    Location:274 → 499
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_020712813.2 → XP_020568472.1  beta-galactoside alpha-2,6-sialyltransferase 2 isoform X1

    UniProtKB/Swiss-Prot
    Q5K027
    UniProtKB/TrEMBL
    A0A3P9JD33
    Conserved Domains (1) summary
    pfam00777
    Location:274 → 499
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5K027.1 GenPept UniProtKB/Swiss-Prot:Q5K027

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