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ST6GALNAC2 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 [ Canis lupus familiaris (dog) ]

Gene ID: 100049005, updated on 17-Aug-2024

Summary

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Official Symbol
ST6GALNAC2provided by VGNC
Official Full Name
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2provided by VGNC
Primary source
VGNC:VGNC:54367
See related
Ensembl:ENSCAFG00845016971
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See ST6GALNAC2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (4826061..4841661)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (4831482..4846448)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (5052356..5067303)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (4851364..4866297)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (4971257..4986179)

Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 Neighboring gene uncharacterized LOC119873221 Neighboring gene uncharacterized LOC100856166 Neighboring gene small nucleolar RNA R38 Neighboring gene small nucleolar RNA R38

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Linkage disequilibrium mapping in domestic dog breeds narrows the progressive rod-cone degeneration interval and identifies ancestral disease-transmitting chromosome. Goldstein O, et al. Genomics, 2006 Nov. PMID 16859891, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
Names
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2
sialyltransferase 7
NP_001091028.1
XP_038530809.1
XP_038530810.1
XP_038530811.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097559.1 → NP_001091028.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 precursor

    See identical proteins and their annotated locations for NP_001091028.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ336164
    UniProtKB/TrEMBL
    A0A8C0Q6J7, A0A8C0QW55, A0A8I3P1G4, A0A8P0SAQ9, Q00M94
    Related
    ENSCAFP00845023620.1, ENSCAFT00845030115.1
    Conserved Domains (1) summary
    pfam00777
    Location:112 → 373
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051813.1 Reference ROS_Cfam_1.0

    Range
    4826061..4841661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038674883.1 → XP_038530811.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 isoform X3

    Conserved Domains (1) summary
    pfam00777
    Location:113 → 329
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_038674881.1 → XP_038530809.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A8I3P1G4, A0A8P0SAQ9
    Conserved Domains (1) summary
    pfam00777
    Location:113 → 411
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_038674882.1 → XP_038530810.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A8I3P1G4, A0A8P0SAQ9
    Conserved Domains (1) summary
    pfam00777
    Location:52 → 350
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049269.1 Alternate UMICH_Zoey_3.1

    Range
    4851364..4866297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

    Range
    4971257..4986179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

    Range
    5052356..5067303
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    4831482..4846448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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