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5330434G04Rik RIKEN cDNA 5330434G04 gene [ Mus musculus (house mouse) ]

Gene ID: 100043213, updated on 17-Aug-2024

Summary

Official Symbol
5330434G04Rikprovided by MGI
Official Full Name
RIKEN cDNA 5330434G04 geneprovided by MGI
Primary source
MGI:MGI:1925519
See related
Ensembl:ENSMUSG00000087620 AllianceGenome:MGI:1925519
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in cerebellum adult (RPKM 1.3), frontal lobe adult (RPKM 1.3) and 5 other tissues See more
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Genomic context

See 5330434G04Rik in Genome Data Viewer
Location:
X D; X 46.89 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (104416600..104435360, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (105372994..105391754, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 50594 Neighboring gene crumbs homolog 1 pseudogene Neighboring gene microRNA 384 Neighboring gene microRNA 325 Neighboring gene RAB9B, member RAS oncogene family, pseudogene 1 Neighboring gene cysteine-rich perinuclear theca 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized LOC100043213

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015552.2 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AL672047
    Related
    ENSMUST00000142109.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    104416600..104435360 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)