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Ermardl1 ER membrane associated RNA degradation like 1 [ Mus musculus (house mouse) ]

Gene ID: 100041621, updated on 9-Aug-2024

Summary

Official Symbol
Ermardl1provided by MGI
Official Full Name
ER membrane associated RNA degradation like 1provided by MGI
Primary source
MGI:MGI:3810125
See related
Ensembl:ENSMUSG00000116895 AllianceGenome:MGI:3810125
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm3435
Expression
Broad expression in testis adult (RPKM 53.6), bladder adult (RPKM 11.3) and 21 other tissues See more
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Genomic context

See Ermardl1 in Genome Data Viewer
Location:
17 A2; 17 8.95 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (15230102..15242711)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (15009840..15022449)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene dynein light chain Tctex-type 2A3 Neighboring gene ER membrane associated RNA degradation like 2 Neighboring gene STARR-seq mESC enhancer starr_41898 Neighboring gene predicted gene 3255 Neighboring gene dynein light chain Tctex-type 2A2 Neighboring gene dynein light chain Tctex-type 2A1 Neighboring gene STARR-seq mESC enhancer starr_41899 Neighboring gene predicted gene, 52298 Neighboring gene STARR-seq mESC enhancer starr_41900 Neighboring gene ER membrane associated RNA degradation Neighboring gene predicted gene, 53990 Neighboring gene predicted gene, 35343

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Clone Names

  • FLJ11152

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC100041621

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123372.1NP_001116844.1  uncharacterized protein LOC100041621

    Status: VALIDATED

    Source sequence(s)
    AC182749, BC052508
    Consensus CDS
    CCDS49962.1
    UniProtKB/TrEMBL
    F6UWZ4, Q8C5I5
    Related
    ENSMUSP00000095007.4, ENSMUST00000097395.5
    Conserved Domains (1) summary
    pfam13910
    Location:133214
    DUF4209; Domain of unknown function (DUF4209)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    15230102..15242711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006523373.4XP_006523436.1  uncharacterized protein LOC100041621 isoform X4

    Conserved Domains (1) summary
    pfam13910
    Location:788
    DUF4209; Domain of unknown function (DUF4209)
  2. XM_006523372.3XP_006523435.1  uncharacterized protein LOC100041621 isoform X3

    UniProtKB/TrEMBL
    Q3TV04
    Conserved Domains (1) summary
    pfam13910
    Location:125206
    DUF4209; Domain of unknown function (DUF4209)
  3. XM_006523370.2XP_006523433.1  uncharacterized protein LOC100041621 isoform X1

    Conserved Domains (1) summary
    pfam13910
    Location:157238
    DUF4209; Domain of unknown function (DUF4209)
  4. XM_030249399.1XP_030105259.1  uncharacterized protein LOC100041621 isoform X5

    Conserved Domains (1) summary
    pfam13910
    Location:157238
    DUF4209; Domain of unknown function (DUF4209)
  5. XM_006523371.5XP_006523434.1  uncharacterized protein LOC100041621 isoform X2

    UniProtKB/TrEMBL
    Q8C5I5
    Conserved Domains (1) summary
    pfam13910
    Location:132213
    DUF4209; Domain of unknown function (DUF4209)
  6. XM_036160229.1XP_036016122.1  uncharacterized protein LOC100041621 isoform X6

    Conserved Domains (1) summary
    pfam13910
    Location:145
    DUF4209; Domain of unknown function (DUF4209)
  7. XM_030249400.2XP_030105260.1  uncharacterized protein LOC100041621 isoform X6

    Conserved Domains (1) summary
    pfam13910
    Location:145
    DUF4209; Domain of unknown function (DUF4209)

RNA

  1. XR_003952068.2 RNA Sequence

  2. XR_003952067.2 RNA Sequence

  3. XR_004939452.1 RNA Sequence