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Dynlt1f dynein light chain Tctex-type 1F [ Mus musculus (house mouse) ]

Gene ID: 100040531, updated on 2-Nov-2024

Summary

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Official Symbol
Dynlt1fprovided by MGI
Official Full Name
dynein light chain Tctex-type 1Fprovided by MGI
Primary source
MGI:MGI:3780996
See related
Ensembl:ENSMUSG00000095677 AllianceGenome:MGI:3780996
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AGS2; Dynlt1; Tctel1; Tctex1; Dynlt1e; Tctex-1; 100040631
Summary
Predicted to enable identical protein binding activity and transmembrane transporter binding activity. Predicted to be involved in several processes, including cardiac muscle cell apoptotic process; intracellular transport of viral protein in host cell; and neuron projection development. Predicted to be located in axonal growth cone; lamellipodium; and neuronal cell body. Predicted to be part of dynein complex. Orthologous to human DYNLT1 (dynein light chain Tctex-type 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in testis adult (RPKM 181.1), CNS E14 (RPKM 69.7) and 27 other tissues See more
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Genomic context

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See Dynlt1f in Genome Data Viewer
Location:
17 A1; 17 4.11 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (6914005..6923338, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (6646606..6655965, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancers mm9_chr17:6806288-6806589 and mm9_chr17:6654863-6655163 Neighboring gene transmembrane protein 181C, pseudogene Neighboring gene dynein light chain Tctex-type 1C Neighboring gene STARR-positive B cell enhancers mm9_chr17:6600655-6600955 and mm9_chr17:6860503-6860804 Neighboring gene synaptotagmin-like 3 Neighboring gene predicted gene, 36309 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:6949847-6950048 Neighboring gene STARR-seq mESC enhancer starr_41734 Neighboring gene ezrin Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:6982099-6982286 Neighboring gene STARR-positive B cell enhancer ABC_E2469

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Several testis-expressed genes in the mouse t-complex have expression differences between wild-type and t-mutant mice. Ha H, et al. Dev Genet, 1991. PMID 1718647
  2. Genetic and molecular analysis of the proximal region of the mouse t-complex using new molecular probes and partial t-haplotypes. Howard CA, et al. Genetics, 1990 Dec. PMID 2076813, Free PMC Article
  3. Cytoplasmic dynein nomenclature. Pfister KK, et al. J Cell Biol, 2005 Nov 7. PMID 16260502, Free PMC Article
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables transmembrane transporter binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in axon development ISO
Inferred from Sequence Orthology
more info
  
involved_in biological_process ND
No biological Data available
more info
  
involved_in cardiac muscle cell apoptotic process ISO
Inferred from Sequence Orthology
more info
  
involved_in dendrite development ISO
Inferred from Sequence Orthology
more info
  
involved_in intracellular transport of viral protein in host cell ISO
Inferred from Sequence Orthology
more info
  
involved_in negative regulation of mitochondrial membrane permeability ISO
Inferred from Sequence Orthology
more info
  
involved_in neuron projection morphogenesis ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of Rac protein signal transduction ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of neuron projection development ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of cytoskeleton organization ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in axonal growth cone ISO
Inferred from Sequence Orthology
more info
  
part_of dynein complex ISO
Inferred from Sequence Orthology
more info
  
located_in lamellipodium ISO
Inferred from Sequence Orthology
more info
  
located_in neuronal cell body ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
dynein light chain Tctex-type 1F
Names
Activator of G-protein signaling 2
Dynein light chain Tctex-type 1
T-complex testis-specific protein 1
dynein light chain Tctex-type 1E

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166627.1 → NP_001160099.1  dynein light chain Tctex-type 1F isoform 1

    See identical proteins and their annotated locations for NP_001160099.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BQ175560, BY250333
    Consensus CDS
    CCDS57043.1
    UniProtKB/Swiss-Prot
    P51807, Q5M8S6
    UniProtKB/TrEMBL
    A1E5T5
    Related
    ENSMUSP00000135978.2, ENSMUST00000179554.3
    Conserved Domains (1) summary
    pfam03645
    Location:16 → 111
    Tctex-1; Tctex-1 family

  2. NM_001199948.1 → NP_001186877.1  dynein light chain Tctex-type 1F isoform 2

    See identical proteins and their annotated locations for NP_001186877.1

    Status: VALIDATED

    Source sequence(s)
    AC175035, AK005569, BE952651
    UniProtKB/TrEMBL
    A0A338P7B7, Q9DAS3
    Conserved Domains (1) summary
    pfam03645
    Location:16 → 90
    Tctex-1; Tctex-1 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    6914005..6923338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001199947.1: Suppressed sequence

    Description
    NM_001199947.1: This RefSeq was permanently suppressed because it was redundant with NM_001166627.1.
Nucleotide Protein Strain
Heading Accession and Version

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