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Atf1-ps activating transcription factor 1, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 100040260, updated on 2-Nov-2024

Summary

Official Symbol
Atf1-psprovided by MGI
Official Full Name
activating transcription factor 1, pseudogeneprovided by MGI
Primary source
MGI:MGI:3037720
See related
AllianceGenome:MGI:3037720
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1862
Summary
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of ATF1-ATF4 transcription factor complex. Orthologous to human ATF1 (activating transcription factor 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See Atf1-ps in Genome Data Viewer
Location:
X A5; X 30.06 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (52885450..52886480, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (53883464..53884513, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor, alpha-induced protein 1 (endothelial) pseudogene Neighboring gene predicted gene, 31171 Neighboring gene STARR-seq mESC enhancer starr_47194 Neighboring gene predicted gene 15482 Neighboring gene STARR-seq mESC enhancer starr_47195 Neighboring gene STARR-seq mESC enhancer starr_47196 Neighboring gene multifunctional methyltransferase subunit TRM112-like protein pseudogene

Genomic regions, transcripts, and products

General protein information

Preferred Names
cyclic AMP-dependent transcription factor ATF-1-like
Names
predicted pseudogene 1862

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    52885450..52886480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036162179.1XP_036018072.1  cyclic AMP-dependent transcription factor ATF-1-like

    UniProtKB/TrEMBL
    Q922R4
    Conserved Domains (2) summary
    cd14690
    Location:213267
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:4882
    pKID; pKID domain