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A630072L19Rik RIKEN cDNA A630072L19 gene [ Mus musculus (house mouse) ]

Gene ID: 100038467, updated on 17-Aug-2024

Summary

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Official Symbol
A630072L19Rikprovided by MGI
Official Full Name
RIKEN cDNA A630072L19 geneprovided by MGI
Primary source
MGI:MGI:3641830
See related
AllianceGenome:MGI:3641830
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See A630072L19Rik in Genome Data Viewer
Location:
12 E; 12 51.12 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (100905378..100910479)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (100938104..100944220)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene D-glutamate cyclase Neighboring gene 60S ribosomal protein L29 pseudogene Neighboring gene G protein-coupled receptor 68 Neighboring gene predicted gene, 36572 Neighboring gene coiled-coil domain containing 88C Neighboring gene STARR-positive B cell enhancer ABC_E8501 Neighboring gene STARR-positive B cell enhancer ABC_E7169 Neighboring gene predicted gene, 36756 Neighboring gene STARR-seq mESC enhancer starr_33081 Neighboring gene microRNA 1190

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    100905378..100910479
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_003950127.2 RNA Sequence

  2. XR_003950130.1 RNA Sequence

  3. XR_003950129.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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