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MCEE methylmalonyl-CoA epimerase [ Sus scrofa (pig) ]

Gene ID: 100037986, updated on 17-Aug-2024

Summary

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Official Symbol
MCEEprovided by VGNC
Official Full Name
methylmalonyl-CoA epimeraseprovided by VGNC
Primary source
VGNC:VGNC:90066
See related
Ensembl:ENSSSCG00000035696
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in liver (RPKM 32.4), heart (RPKM 30.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See MCEE in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (143993714..144022372)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (159939241..159967926)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene myotubularin related protein 10 Neighboring gene FANCD2 and FANCI associated nuclease 1 Neighboring gene M-phase phosphoprotein 10 Neighboring gene occludin/ELL domain-containing protein 1 pseudogene Neighboring gene amyloid beta precursor protein binding family A member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methylmalonyl-CoA epimerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-methylmalonyl-CoA metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methylmalonyl-CoA epimerase, mitochondrial
NP_001090940.1
XP_020928261.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097471.2 → NP_001090940.1  methylmalonyl-CoA epimerase, mitochondrial

    See identical proteins and their annotated locations for NP_001090940.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ629149
    UniProtKB/TrEMBL
    A0A286ZW02, A0A4X1UB35, A0A8D0QAY5, A0A8D0QR09, A1XQS7
    Related
    ENSSSCP00000035852.3, ENSSSCT00000060425.3
    Conserved Domains (1) summary
    TIGR03081
    Location:47 → 175
    metmalonyl_epim; methylmalonyl-CoA epimerase

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    143993714..144022372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021072602.1 → XP_020928261.1  methylmalonyl-CoA epimerase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8D0QAY5, A0A8W4F9Q9
    Related
    ENSSSCP00000075027.1, ENSSSCT00000096613.1
    Conserved Domains (1) summary
    TIGR03081
    Location:44 → 172
    metmalonyl_epim; methylmalonyl-CoA epimerase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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