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ttc7b tetratricopeptide repeat domain 7B [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100037906, updated on 4-Nov-2024

Summary

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Official Symbol
ttc7bprovided by Xenbase
Official Full Name
tetratricopeptide repeat domain 7Bprovided by Xenbase
Primary source
Xenbase:XB-GENE-5738866
See related
Ensembl:ENSXETG00000032970 AllianceGenome:Xenbase:XB-GENE-5738866
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Orthologous to human TTC7B (tetratricopeptide repeat domain 7B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See ttc7b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
22
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (86820100..86896099, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (65766415..65841427, complement)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116406962 Neighboring gene calmodulin 1 (phosphorylase kinase, delta) Neighboring gene ribosomal protein S6 kinase, 90kDa, polypeptide 5 Neighboring gene D-glutamate cyclase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
tetratricopeptide repeat protein 7B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097339.1 → NP_001090808.1  tetratricopeptide repeat protein 7B

    See identical proteins and their annotated locations for NP_001090808.1

    Status: PROVISIONAL

    Source sequence(s)
    BC135246
    UniProtKB/TrEMBL
    A0A6I8RZL9, A4IGU1
    Related
    ENSXETP00000088121.2, ENSXETT00000100698.2
    Conserved Domains (3) summary
    TIGR02917
    Location:407 → 833
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00008
    Location:431 → 459
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:730 → 758
    TPR; TPR repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    86820100..86896099 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031906816.1 → XP_031762676.1  tetratricopeptide repeat protein 7B isoform X2

    UniProtKB/TrEMBL
    A0A6I8PZQ8, A0A6I8RZL9
    Related
    ENSXETP00000061941.2, ENSXETT00000061624.3
    Conserved Domains (4) summary
    TIGR00990
    Location:687 → 860
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    TIGR02917
    Location:407 → 851
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00008
    Location:431 → 459
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:748 → 776
    TPR; TPR repeat [structural motif]

  2. XM_031906815.1 → XP_031762675.1  tetratricopeptide repeat protein 7B isoform X1

    UniProtKB/TrEMBL
    A0A8J1K0C8
    Conserved Domains (3) summary
    COG0457
    Location:365 → 619
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00008
    Location:431 → 459
    TPR_YbbN; TPR repeat [structural motif]
    sd00006
    Location:365 → 391
    TPR; TPR repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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