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zbtb6 zinc finger and BTB domain containing 6 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100037884, updated on 14-Nov-2024

Summary

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Official Symbol
zbtb6provided by Xenbase
Official Full Name
zinc finger and BTB domain containing 6provided by Xenbase
Primary source
Xenbase:XB-GENE-5823898
See related
Ensembl:ENSXETG00000020530 AllianceGenome:Xenbase:XB-GENE-5823898
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
zid; znf482
Summary
Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; regulation of cytokine production; and regulation of immune system process. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Orthologous to human ZBTB6 (zinc finger and BTB domain containing 6). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See zbtb6 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (36705758..36711417, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (16076320..16081856)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene keratin 18, gene 2 Neighboring gene zinc finger and BTB domain containing 26 Neighboring gene shroom family member 4 Neighboring gene cyclin-O protein B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097323.1 → NP_001090792.1  zinc finger and BTB domain-containing protein 6

    See identical proteins and their annotated locations for NP_001090792.1

    Status: PROVISIONAL

    Source sequence(s)
    BC135185
    UniProtKB/TrEMBL
    A4IGN9
    Related
    ENSXETP00000109469.1, ENSXETT00000108767.1
    Conserved Domains (4) summary
    sd00017
    Location:317 → 337
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:315 → 337
    zf-C2H2; Zinc finger, C2H2 type
    cd18197
    Location:7 → 122
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)
    pfam13465
    Location:329 → 353
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    36705758..36711417 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031906811.1 → XP_031762671.1  zinc finger and BTB domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A8J1K1W1
    Conserved Domains (5) summary
    sd00017
    Location:350 → 370
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18197
    Location:40 → 155
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)
    pfam00096
    Location:348 → 370
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:362 → 386
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:353 → 423
    zf-C2H2_8; C2H2-type zinc ribbon

  2. XM_012953771.3 → XP_012809225.1  zinc finger and BTB domain-containing protein 6 isoform X2

    See identical proteins and their annotated locations for XP_012809225.1

    UniProtKB/TrEMBL
    A4IGN9
    Conserved Domains (4) summary
    sd00017
    Location:317 → 337
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:315 → 337
    zf-C2H2; Zinc finger, C2H2 type
    cd18197
    Location:7 → 122
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)
    pfam13465
    Location:329 → 353
    zf-H2C2_2; Zinc-finger double domain

  3. XM_012953769.3 → XP_012809223.1  zinc finger and BTB domain-containing protein 6 isoform X2

    See identical proteins and their annotated locations for XP_012809223.1

    UniProtKB/TrEMBL
    A4IGN9
    Related
    ENSXETP00000060560.2, ENSXETT00000065991.3
    Conserved Domains (4) summary
    sd00017
    Location:317 → 337
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:315 → 337
    zf-C2H2; Zinc finger, C2H2 type
    cd18197
    Location:7 → 122
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)
    pfam13465
    Location:329 → 353
    zf-H2C2_2; Zinc-finger double domain

  4. XM_012953772.3 → XP_012809226.1  zinc finger and BTB domain-containing protein 6 isoform X2

    See identical proteins and their annotated locations for XP_012809226.1

    UniProtKB/TrEMBL
    A4IGN9
    Conserved Domains (4) summary
    sd00017
    Location:317 → 337
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:315 → 337
    zf-C2H2; Zinc finger, C2H2 type
    cd18197
    Location:7 → 122
    BTB_POZ_ZBTB6; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 6 (ZBTB6)
    pfam13465
    Location:329 → 353
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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