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LOC100037461 SDL5A [ Glycine max (soybean) ]

Gene ID: 100037461, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100037461
Gene description
SDL5A
Locus tag
GLYMA_08G023300v4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100037461 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
16
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (1861454..1867691)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (1862014..1868251)

Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100781803 Neighboring gene UDP-glucose 4-epimerase GEPI48 Neighboring gene GDSL esterase/lipase At4g10955 Neighboring gene uncharacterized LOC100782341

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phragmoplastin, a dynamin-like protein associated with cell plate formation in plants. Gu X, et al. EMBO J, 1996 Feb 15. PMID 8631291, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in receptor-mediated endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dynamin-related protein 5A
Names
soybean dynamin-like protein 5A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001249253.1 → NP_001236182.1  dynamin-related protein 5A

    See identical proteins and their annotated locations for NP_001236182.1

    Status: PROVISIONAL

    Source sequence(s)
    U36430
    UniProtKB/Swiss-Prot
    Q39821, Q39828
    UniProtKB/TrEMBL
    A0A0R0ILF6
    Conserved Domains (3) summary
    smart00302
    Location:513 → 606
    GED; Dynamin GTPase effector domain
    cd08771
    Location:33 → 300
    DLP_1; Dynamin_like protein family includes dynamins and Mx proteins
    pfam01031
    Location:222 → 495
    Dynamin_M; Dynamin central region

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    1861454..1867691
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q39828.1 GenPept UniProtKB/Swiss-Prot:Q39828

Gene LinkOut

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Molecular Biology Databases