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rbm42.S RNA binding motif protein 42 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100037209, updated on 18-Sep-2024

Summary

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Official Symbol
rbm42.S
Official Full Name
RNA binding motif protein 42 S homeolog
Primary source
Xenbase:XB-GENE-5896841
Locus tag
XELAEV_18038018mg
See related
EnsemblRapid:ENSXLAG00005010500
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rbm42; rbm42a; rbm42-a; rbm42-b
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Genomic context

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See rbm42.S in Genome Data Viewer
Location:
chromosome: 7S
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (109816137..109827005)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (87542734..87553702, complement)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene G protein-activated inward rectifier potassium channel 3-like Neighboring gene lysine methyltransferase 2B S homeolog Neighboring gene Fli-1 proto-oncogene, ETS transcription factor beta S homeolog Neighboring gene ETS variant transcription factor 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RNA-binding protein 42
Names
RNA binding motif protein 42 a
RNA-binding motif protein 42

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097898.1 → NP_001091367.1  RNA-binding protein 42

    See identical proteins and their annotated locations for NP_001091367.1

    Status: PROVISIONAL

    Source sequence(s)
    BC129697
    UniProtKB/Swiss-Prot
    A2VDB3
    UniProtKB/TrEMBL
    A0A974CD89
    Related
    ENSXLAP00005030968.1, ENSXLAT00005031734.1
    Conserved Domains (2) summary
    COG0724
    Location:289 → 374
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12383
    Location:287 → 369
    RRM_RBM42; RNA recognition motif in RNA-binding protein 42 (RBM42) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    109816137..109827005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041570281.1 → XP_041426215.1  RNA-binding protein 42 isoform X1

    UniProtKB/TrEMBL
    A0A8J1LC25, A0A974CD89
    Related
    ENSXLAP00005030974.1, ENSXLAT00005031739.1
    Conserved Domains (1) summary
    smart00360
    Location:294 → 361
    RRM; RNA recognition motif
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A2VDB3.1 GenPept UniProtKB/Swiss-Prot:A2VDB3

Gene LinkOut

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