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cavin4.S caveolae associated protein 4 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100037205, updated on 4-Nov-2024

Summary

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Official Symbol
cavin4.S
Official Full Name
caveolae associated protein 4 S homeolog
Primary source
Xenbase:XB-GENE-877096
Locus tag
XELAEV_18033343mg
See related
EnsemblRapid:ENSXLAG00005004552 AllianceGenome:Xenbase:XB-GENE-877096
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
murc; cavin4; murc.S
Summary
Predicted to act upstream of or within cell differentiation; muscle organ development; and regulation of gene expression. Predicted to be located in caveola. Orthologous to human CAVIN4 (caveolae associated protein 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See cavin4.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (61942677..61952159, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (57731600..57741043, complement)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene dynein heavy chain 8, axonemal-like Neighboring gene uncharacterized LOC121395082 Neighboring gene transmembrane protein with EGF like and two follistatin like domains 1 S homeolog Neighboring gene solute carrier family 39 (zinc transporter), member 6 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within muscle organ development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in caveola IEA
Inferred from Electronic Annotation
more info
  
located_in caveola ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in sarcomere IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
caveolae-associated protein 4
Names
PTRF/SDPR family protein
muscle-related coiled-coil protein S homeolog
muscle-restricted coiled-coil protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097894.1 → NP_001091363.1  caveolae-associated protein 4

    See identical proteins and their annotated locations for NP_001091363.1

    Status: PROVISIONAL

    Source sequence(s)
    BC129673
    UniProtKB/Swiss-Prot
    A2VDA9
    UniProtKB/TrEMBL
    A0A974CKL3
    Related
    ENSXLAP00005013611.1, ENSXLAT00005013793.1
    Conserved Domains (1) summary
    pfam15237
    Location:28 → 253
    PTRF_SDPR; PTRF/SDPR family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    61942677..61952159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A2VDA9.1 GenPept UniProtKB/Swiss-Prot:A2VDA9

Gene LinkOut

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