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ubxn6.L UBX domain protein 6 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100037069, updated on 4-Nov-2024

Summary

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Official Symbol
ubxn6.L
Official Full Name
UBX domain protein 6 L homeolog
Primary source
Xenbase:XB-GENE-971817
Locus tag
XELAEV_18006107mg
See related
EnsemblRapid:ENSXLAG00005016158 AllianceGenome:Xenbase:XB-GENE-971817
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ubxd1; ubxn6
Summary
Predicted to be located in cytoplasm. Orthologous to human UBXN6 (UBX domain protein 6). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ubxn6.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (101481413..101506023)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (89833386..89858022)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene perilipin 3 L homeolog Neighboring gene HDGF like 2 L homeolog Neighboring gene chromatin assembly factor 1 subunit A L homeolog Neighboring gene SH3-domain GRB2-like 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
UBX domain protein 6 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097794.1 → NP_001091263.1  UBX domain protein 6 L homeolog

    See identical proteins and their annotated locations for NP_001091263.1

    Status: PROVISIONAL

    Source sequence(s)
    BC130084
    UniProtKB/TrEMBL
    A0A974I424, A2BD85
    Related
    ENSXLAP00005047547.1, ENSXLAT00005048657.1
    Conserved Domains (2) summary
    cd10460
    Location:147 → 250
    PUB_UBXD1; PNGase/UBA or UBX (PUB) domain of UBXD1
    cl00155
    Location:319 → 396
    UBQ; Ubiquitin-like proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    101481413..101506023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041590148.1 → XP_041446082.1  UBX domain protein 6 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1MWC6
    Conserved Domains (2) summary
    cd10460
    Location:90 → 193
    PUB_UBXD1; PNGase/UBA or UBX (PUB) domain of UBXD1
    cd16119
    Location:266 → 338
    UBX_UBXN6; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 6 (UBXN6) and similar proteins

  2. XM_018265795.2 → XP_018121284.1  UBX domain protein 6 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0VDA9

  3. XM_041589767.1 → XP_041445701.1  UBX domain protein 6 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1MWC6
    Conserved Domains (2) summary
    cd10460
    Location:90 → 193
    PUB_UBXD1; PNGase/UBA or UBX (PUB) domain of UBXD1
    cd16119
    Location:266 → 338
    UBX_UBXN6; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 6 (UBXN6) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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