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pld6.S phospholipase D family member 6 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100037063, updated on 18-Sep-2024

Summary

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Official Symbol
pld6.S
Official Full Name
phospholipase D family member 6 S homeolog
Primary source
Xenbase:XB-GENE-5729953
Locus tag
XELAEV_18047795mg
See related
EnsemblRapid:ENSXLAG00005011131
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pld6
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Genomic context

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See pld6.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (106114608..106120299, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (99470827..99476551, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25 Neighboring gene uncharacterized LOC108703234 Neighboring gene folliculin S homeolog Neighboring gene COP9 signalosome subunit 3 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA endonuclease activity, producing 5'-phosphomonoesters IEA
Inferred from Electronic Annotation
more info
  
enables cardiolipin hydrolase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables endonuclease activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein homodimerization activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within P granule organization ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within meiotic cell cycle ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within mitochondrial fusion ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within piRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within spermatid development ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within spermatogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial outer membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
mitochondrial cardiolipin hydrolase
Names
PLD 6
Probable phospholipase D family member FLJ33580 homolog
choline phosphatase 6
mitoPLD
mitochondrial phospholipase
phosphatidylcholine-hydrolyzing phospholipase D6
phospholipase D family, member 6
phospholipase D6
NP_001091258.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097789.1 → NP_001091258.1  mitochondrial cardiolipin hydrolase

    See identical proteins and their annotated locations for NP_001091258.1

    Status: PROVISIONAL

    Source sequence(s)
    BC128979
    UniProtKB/Swiss-Prot
    A1L1C2
    UniProtKB/TrEMBL
    A0A974BVX5
    Related
    ENSXLAP00005032709.1, ENSXLAT00005033502.1
    Conserved Domains (3) summary
    cd09171
    Location:58 → 193
    PLDc_vPLD6_like; Catalytic domain of vertebrate phospholipase D6 and similar proteins
    pfam13091
    Location:71 → 193
    PLDc_2; PLD-like domain
    cl21453
    Location:37 → 74
    PKc_like; Protein Kinases, catalytic domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    106114608..106120299 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1L1C2.1 GenPept UniProtKB/Swiss-Prot:A1L1C2

Gene LinkOut

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