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fam171a2.S family with sequence similarity 171 member A2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100037014, updated on 4-Nov-2024

Summary

Official Symbol
fam171a2.S
Official Full Name
family with sequence similarity 171 member A2 S homeolog
Primary source
Xenbase:XB-GENE-17339452
Locus tag
XELAEV_18046045mg
See related
EnsemblRapid:ENSXLAG00005032789 AllianceGenome:Xenbase:XB-GENE-17339452
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fam171a2
Summary
Predicted to be located in membrane. Orthologous to human FAM171A2 (family with sequence similarity 171 member A2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See fam171a2.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (4741863..4755368)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (4614335..4628015)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene G-patch domain containing 8 S homeolog Neighboring gene integrin subunit alpha 2b S homeolog Neighboring gene uncharacterized LOC121399157 Neighboring gene uncharacterized LOC108711600

Genomic regions, transcripts, and products

General protein information

Preferred Names
protein FAM171A2
Names
UPF0560 protein ENSP00000381388 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097759.1NP_001091228.1  protein FAM171A2 precursor

    See identical proteins and their annotated locations for NP_001091228.1

    Status: PROVISIONAL

    Source sequence(s)
    BC130114
    UniProtKB/Swiss-Prot
    A1L3I3
    UniProtKB/TrEMBL
    A0A974BSI0
    Related
    ENSXLAP00005098400.1, ENSXLAT00005100218.1
    Conserved Domains (1) summary
    pfam10577
    Location:44819
    UPF0560; uncharacterized protein family UPF0560

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    4741863..4755368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)