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sp3.S Sp3 transcription factor S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100037013, updated on 17-Aug-2024

Summary

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Official Symbol
sp3.S
Official Full Name
Sp3 transcription factor S homeolog
Primary source
Xenbase:XB-GENE-977162
Locus tag
XELAEV_18047179mg
See related
EnsemblRapid:ENSXLAG00005030306
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sp3; spr2
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Genomic context

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See sp3.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (67473575..67494012, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (60813105..60833184, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 20 S homeolog Neighboring gene cell division cycle associated 7 S homeolog Neighboring gene Obg-like ATPase 1 S homeolog Neighboring gene Sp9 transcription factor S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Sp3 transcription factor S homeolog; sp3 transcription factor S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128624.1 → NP_001122096.1  Sp3 transcription factor S homeolog

    See identical proteins and their annotated locations for NP_001122096.1

    Status: PROVISIONAL

    Source sequence(s)
    BC167502
    UniProtKB/TrEMBL
    A0A974H1C4, A1L3H9, B3DLM3
    Conserved Domains (4) summary
    COG5048
    Location:580 → 662
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:567 → 589
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:625 → 647
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:611 → 634
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    67473575..67494012 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041577595.1 → XP_041433529.1  sp3 transcription factor S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LVY0, A1L3H9
    Related
    ENSXLAP00005090656.1, ENSXLAT00005092334.1
    Conserved Domains (3) summary
    smart00355
    Location:633 → 655
    ZnF_C2H2; zinc finger
    COG5048
    Location:588 → 670
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:575 → 597
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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