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stard4.L StAR related lipid transfer domain containing 4 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100036965, updated on 4-Nov-2024

Summary

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Official Symbol
stard4.L
Official Full Name
StAR related lipid transfer domain containing 4 L homeolog
Primary source
Xenbase:XB-GENE-5944118
Locus tag
XELAEV_18008009mg
See related
EnsemblRapid:ENSXLAG00005030085 AllianceGenome:Xenbase:XB-GENE-5944118
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
stard4
Summary
Predicted to enable cholesterol binding activity and cholesterol transfer activity. Predicted to act upstream of or within cholesterol import; cholesterol transport involved in cholesterol storage; and intracellular cholesterol transport. Predicted to be located in cytosol and endoplasmic reticulum. Orthologous to human STARD4 (StAR related lipid transfer domain containing 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See stard4.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (188223976..188242684)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (175076423..175095102)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene erythrocyte membrane protein band 4.1 like 4A L homeolog Neighboring gene uncharacterized LOC108717350 Neighboring gene calcium/calmodulin-dependent protein kinase IV L homeolog Neighboring gene WD repeat domain 36 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables cholesterol binding IEA
Inferred from Electronic Annotation
more info
  
enables cholesterol transfer activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cholesterol import IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cholesterol transport involved in cholesterol storage IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within intracellular cholesterol transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
StAR related lipid transfer domain containing 4 L homeolog
Names
StAR-related lipid transfer (START) domain containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097728.1 → NP_001091197.1  StAR related lipid transfer domain containing 4 L homeolog

    See identical proteins and their annotated locations for NP_001091197.1

    Status: PROVISIONAL

    Source sequence(s)
    BC129726
    UniProtKB/TrEMBL
    A0A974E2Z7, A1L2V5
    Related
    ENSXLAP00005090030.1, ENSXLAT00005091706.1
    Conserved Domains (1) summary
    cd08902
    Location:4 → 205
    START_STARD4-like; Lipid-binding START domain of mammalian STARD4 and related proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    188223976..188242684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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