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sds.L serine dehydratase L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100036942, updated on 4-Nov-2024

Summary

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Official Symbol
sds.L
Official Full Name
serine dehydratase L homeolog
Primary source
Xenbase:XB-GENE-17334667
Locus tag
XELAEV_18007448mg
See related
EnsemblRapid:ENSXLAG00005016343 AllianceGenome:Xenbase:XB-GENE-17334667
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable L-serine ammonia-lyase activity; pyridoxal phosphate binding activity; and threonine deaminase activity. Predicted to act upstream of or within L-serine catabolic process; isoleucine biosynthetic process; and threonine catabolic process. Orthologous to human SDS (serine dehydratase). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See sds.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (158200633..158209479)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (145225889..145234746)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108715548 Neighboring gene LIM homeobox 5 L homeolog Neighboring gene uncharacterized LOC121394565 Neighboring gene phospholipase B domain containing 2 L homeolog Neighboring gene solute carrier family 8 (sodium/lithium/calcium exchanger), member B1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables L-serine ammonia-lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
  
enables threonine deaminase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within L-serine catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within isoleucine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within threonine catabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC100036942

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097712.1 → NP_001091181.1  uncharacterized protein LOC100036942

    See identical proteins and their annotated locations for NP_001091181.1

    Status: PREDICTED

    Source sequence(s)
    BC129695
    UniProtKB/TrEMBL
    A0A974E0R4, A1L2T1
    Related
    ENSXLAP00005048135.1, ENSXLAT00005049250.1
    Conserved Domains (2) summary
    cd06448
    Location:11 → 320
    L-Ser-dehyd; Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
    pfam00291
    Location:11 → 304
    PALP; Pyridoxal-phosphate dependent enzyme

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    158200633..158209479
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials