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tmem120a.L transmembrane protein 120A L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100036930, updated on 4-Nov-2024

Summary

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Official Symbol
tmem120a.L
Official Full Name
transmembrane protein 120A L homeolog
Primary source
Xenbase:XB-GENE-5858597
Locus tag
XELAEV_18012686mg
See related
EnsemblRapid:ENSXLAG00005003951 AllianceGenome:Xenbase:XB-GENE-5858597
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tmpit; tmem120a
Summary
Predicted to enable monoatomic ion channel activity. Predicted to act upstream of or within detection of mechanical stimulus involved in sensory perception of pain and monoatomic ion transmembrane transport. Predicted to be located in plasma membrane. Orthologous to human TMEM120A (transmembrane protein 120A). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tmem120a.L in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (97729269..97747159, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (91991725..92009653, complement)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene P450 (cytochrome) oxidoreductase L homeolog Neighboring gene zinc finger BED domain-containing protein 5-like Neighboring gene serine/threonine/tyrosine interacting-like 1 L homeolog Neighboring gene malate dehydrogenase 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables monoatomic ion channel activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within detection of mechanical stimulus involved in sensory perception of pain ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within fat cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within monoatomic ion transmembrane transport ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
ion channel TACAN

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097701.1 → NP_001091170.1  ion channel TACAN

    See identical proteins and their annotated locations for NP_001091170.1

    Status: PROVISIONAL

    Source sequence(s)
    BC129679
    UniProtKB/Swiss-Prot
    A1L2R7
    UniProtKB/TrEMBL
    A0A974DN42
    Related
    ENSXLAP00005011853.1, ENSXLAT00005012027.1
    Conserved Domains (1) summary
    pfam07851
    Location:10 → 335
    TMPIT; TMPIT-like protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    97729269..97747159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1L2R7.1 GenPept UniProtKB/Swiss-Prot:A1L2R7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.