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slc49a3.S solute carrier family 49 member 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100036909, updated on 4-Nov-2024

Summary

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Official Symbol
slc49a3.S
Official Full Name
solute carrier family 49 member 3 S homeolog
Primary source
Xenbase:XB-GENE-6255873
Locus tag
XELAEV_18001209mg
See related
EnsemblRapid:ENSXLAG00005014569 AllianceGenome:Xenbase:XB-GENE-6255873
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
mfsd7; lp2561; mfsd7.S
Summary
Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Orthologous to human SLC49A3 (solute carrier family 49 member 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See slc49a3.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (101113140..101134332)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694812.1 (3615401..3636609, complement)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene complexin 1 S homeolog Neighboring gene polycomb group ring finger 3 S homeolog Neighboring gene diacylglycerol kinase theta S homeolog Neighboring gene survival motor neuron protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
major facilitator superfamily domain containing protein 7
Names
major facilitator superfamily domain containing 7 S homeolog
major facilitator superfamily domain-containing protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097685.1 → NP_001091154.1  major facilitator superfamily domain containing protein 7

    See identical proteins and their annotated locations for NP_001091154.1

    Status: PROVISIONAL

    Source sequence(s)
    BC129637
    UniProtKB/TrEMBL
    A1L2P3
    Conserved Domains (2) summary
    cd06174
    Location:46 → 459
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    pfam07690
    Location:49 → 407
    MFS_1; Major Facilitator Superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    101113140..101134332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018239807.2 → XP_018095296.1  major facilitator superfamily domain containing protein 7 isoform X2

    UniProtKB/TrEMBL
    A0A8J0TUZ2
    Related
    ENSXLAP00005042629.1, ENSXLAT00005043696.1

  2. XM_018239804.2 → XP_018095293.1  major facilitator superfamily domain containing protein 7 isoform X1

    UniProtKB/TrEMBL
    A1L2P3

  3. XM_018239805.2 → XP_018095294.1  major facilitator superfamily domain containing protein 7 isoform X1

    UniProtKB/TrEMBL
    A1L2P3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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