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slc66a1.L solute carrier family 66 member 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100036889, updated on 18-Sep-2024

Summary

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Official Symbol
slc66a1.L
Official Full Name
solute carrier family 66 member 1 L homeolog
Primary source
Xenbase:XB-GENE-996170
Locus tag
XELAEV_18036418mg
See related
EnsemblRapid:ENSXLAG00005015877
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pqlc2; pqlc2.L
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Genomic context

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See slc66a1.L in Genome Data Viewer
Location:
chromosome: 7L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (136191839..136208876, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (121224284..121241387)

Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene mitochondrial contact site and cristae organizing system subunit 10 L homeolog Neighboring gene capping actin protein of muscle Z-line subunit beta L homeolog Neighboring gene novel protein similar to pqlc2 L homeolog Neighboring gene aldo-keto reductase family 7, member A2 L homeolog Neighboring gene U7 small nuclear RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arginine-selective modulation of the lysosomal transporter PQLC2 through a gate-tuning mechanism. Leray X, et al. Proc Natl Acad Sci U S A, 2021 Aug 10. PMID 34344826, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Arginine-selective modulation of the lysosomal transporter PQLC2 through a gate-tuning mechanism.
    Title: Arginine-selective modulation of the lysosomal transporter PQLC2 through a gate-tuning mechanism.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables L-lysine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
solute carrier family 66 member 1 L homeolog
Names
PQ loop repeat containing 2 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097669.1 → NP_001091138.1  solute carrier family 66 member 1 L homeolog

    See identical proteins and their annotated locations for NP_001091138.1

    Status: PROVISIONAL

    Source sequence(s)
    BC129600
    UniProtKB/TrEMBL
    A0A974HDF7, A1L2M0
    Related
    ENSXLAP00005046756.1, ENSXLAT00005047860.1
    Conserved Domains (1) summary
    pfam04193
    Location:187 → 247
    PQ-loop; PQ loop repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    136191839..136208876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041568311.1 → XP_041424245.1  solute carrier family 66 member 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1L6L9, A0A974HDF7
    Related
    ENSXLAP00005046748.1, ENSXLAT00005047852.1
    Conserved Domains (1) summary
    smart00679
    Location:201 → 232
    CTNS; Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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