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ptcd2.L pentatricopeptide repeat domain 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100036884, updated on 4-Nov-2024

Summary

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Official Symbol
ptcd2.L
Official Full Name
pentatricopeptide repeat domain 2 L homeolog
Primary source
Xenbase:XB-GENE-985817
Locus tag
XELAEV_18008140mg
See related
EnsemblRapid:ENSXLAG00005008030 AllianceGenome:Xenbase:XB-GENE-985817
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ptcd2
Summary
Predicted to enable RNA binding activity. Predicted to act upstream of or within regulation of mRNA processing. Predicted to be located in mitochondrion. Orthologous to human PTCD2 (pentatricopeptide repeat domain 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ptcd2.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (199044713..199063180)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (185923480..185942150)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene microtubule associated protein 1B L homeolog Neighboring gene mitochondrial ribosomal protein S27 L homeolog Neighboring gene zinc finger protein 366 L homeolog Neighboring gene transportin 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitochondrion organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of mRNA processing ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein 2, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097665.1 → NP_001091134.1  pentatricopeptide repeat-containing protein 2, mitochondrial

    See identical proteins and their annotated locations for NP_001091134.1

    Status: PROVISIONAL

    Source sequence(s)
    BC129589
    UniProtKB/Swiss-Prot
    A1L2L5
    UniProtKB/TrEMBL
    A0A974I608
    Related
    ENSXLAP00005023003.1, ENSXLAT00005023706.1
    Conserved Domains (2) summary
    sd00004
    Location:158 → 187
    PPR; PPR repeat [structural motif]
    pfam10037
    Location:128 → 205
    MRP-S27; Mitochondrial 28S ribosomal protein S27

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    199044713..199063180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018245066.2 → XP_018100555.1  pentatricopeptide repeat-containing protein 2, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8J0UEQ7, A0A974I608
    Related
    ENSXLAP00005023015.1, ENSXLAT00005023718.1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1L2L5.1 GenPept UniProtKB/Swiss-Prot:A1L2L5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.