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egln3.S egl-9 family hypoxia-inducible factor 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100036879, updated on 17-Aug-2024

Summary

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Official Symbol
egln3.S
Official Full Name
egl-9 family hypoxia-inducible factor 3 S homeolog
Primary source
Xenbase:XB-GENE-17334118
Locus tag
XELAEV_18042633mg
See related
EnsemblRapid:ENSXLAG00005006530
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
phd3; PHD28
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Genomic context

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Location:
chromosome: 8S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (88133322..88142670, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (85756368..85765716, complement)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108700312 Neighboring gene neuronal PAS domain protein 3 S homeolog Neighboring gene uncharacterized LOC108700314 Neighboring gene uncharacterized LOC121397799 Neighboring gene uncharacterized LOC121397796 Neighboring gene serine palmitoyltransferase small subunit A S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC100036879

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097660.1 → NP_001091129.1  uncharacterized protein LOC100036879

    See identical proteins and their annotated locations for NP_001091129.1

    Status: PREDICTED

    Source sequence(s)
    BC129582
    UniProtKB/TrEMBL
    A0A974H6P5, A1L2K9
    Related
    ENSXLAP00005019423.1, ENSXLAT00005019758.1
    Conserved Domains (1) summary
    smart00702
    Location:54 → 225
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    88133322..88142670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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