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lman2l.S lectin, mannose-binding 2-like S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100036857, updated on 4-Nov-2024

Summary

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Official Symbol
lman2l.S
Official Full Name
lectin, mannose-binding 2-like S homeolog
Primary source
Xenbase:XB-GENE-999362
Locus tag
XELAEV_18020307mg
See related
EnsemblRapid:ENSXLAG00005016415 AllianceGenome:Xenbase:XB-GENE-999362
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
lman2l
Summary
Predicted to enable D-mannose binding activity. Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi membrane; and endoplasmic reticulum-Golgi intermediate compartment. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder and autosomal recessive intellectual developmental disorder 52. Orthologous to human LMAN2L (lectin, mannose binding 2 like). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See lman2l.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (28252425..28266660)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (27094996..27109256)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene metal transporter CNNM3-like Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 4 S homeolog Neighboring gene neuralized E3 ubiquitin protein ligase 3 S homeolog Neighboring gene non-SMC condensin I complex subunit H S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    28252425..28266660
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018255152.2 → XP_018110641.1  VIP36-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8J0UW01, A1L2I4
    Related
    ENSXLAP00005048332.1, ENSXLAT00005049447.1

  2. XM_018255153.2 → XP_018110642.1  VIP36-like protein isoform X2

    UniProtKB/TrEMBL
    A0A1L8GS08, A0A974D9H2, A1L2I4
    Related
    ENSXLAP00005048339.1, ENSXLAT00005049453.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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