ttc7b.L tetratricopeptide repeat domain 7B L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: ttc7b.L
Official Full Name: tetratricopeptide repeat domain 7B L homeolog
Primary source: Xenbase:XB-GENE-5738921
Locus tag: XELAEV_18039535mg
See related: EnsemblRapid:ENSXLAG00005017623 AllianceGenome:Xenbase:XB-GENE-5738921
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: ttc7b
Summary: Predicted to act upstream of or within phosphatidylinositol phosphate biosynthetic process and protein localization to plasma membrane. Predicted to be located in plasma membrane. Orthologous to human TTC7B (tetratricopeptide repeat domain 7B). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 8L

Exon count:: 22

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	8L	NC_054385.1 (77786236..77852125, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	8L	NC_030738.1 (64358549..64424363, complement)

Chromosome 8L - NC_054385.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within phosphatidylinositol phosphate biosynthetic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein localization to plasma membrane	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: tetratricopeptide repeat domain 7B L homeolog

Names: tetratricopeptide repeat protein 7 like (3C965)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001097102.1 → NP_001090571.1 tetratricopeptide repeat domain 7B L homeolog

See identical proteins and their annotated locations for NP_001090571.1

Status: PROVISIONAL

Source sequence(s)

BC128688

UniProtKB/TrEMBL

A0A974H804, A1A5K0

Related

ENSXLAP00005052056.1, ENSXLAT00005053220.1

Conserved Domains (4) summary

sd00008
Location:431 → 459

TPR_YbbN; TPR repeat [structural motif]

sd00006
Location:730 → 758

TPR; TPR repeat [structural motif]

pfam07719
Location:732 → 763

TPR_2; Tetratricopeptide repeat

pfam13414
Location:732 → 794

TPR_11; TPR repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

77786236..77852125 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041571842.1 → XP_041427776.1 tetratricopeptide repeat domain 7B L homeolog isoform X1

UniProtKB/TrEMBL

A0A8J1LEA6, A0A974H804

Related

ENSXLAP00005052037.1, ENSXLAT00005053201.1

Conserved Domains (4) summary

TIGR00990
Location:737 → 910

3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

TIGR02917
Location:343 → 902

PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein

sd00008
Location:431 → 459

TPR_YbbN; TPR repeat [structural motif]

sd00006
Location:798 → 826

TPR; TPR repeat [structural motif]
XM_041571843.1 → XP_041427777.1 tetratricopeptide repeat domain 7B L homeolog isoform X2

UniProtKB/TrEMBL

A0A8J1LE15, A0A974H804

Related

ENSXLAP00005052041.1, ENSXLAT00005053205.1

Conserved Domains (4) summary

TIGR00990
Location:719 → 892

3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

TIGR02917
Location:368 → 884

PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein

sd00008
Location:431 → 459

TPR_YbbN; TPR repeat [structural motif]

sd00006
Location:780 → 808

TPR; TPR repeat [structural motif]
XM_041571844.1 → XP_041427778.1 tetratricopeptide repeat domain 7B L homeolog isoform X3

UniProtKB/TrEMBL

A0A8J1LE03, A0A974H804

Related

ENSXLAP00005052044.1, ENSXLAT00005053208.1

Conserved Domains (4) summary

TIGR00990
Location:687 → 860

3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

TIGR02917
Location:407 → 852

PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein

sd00008
Location:431 → 459

TPR_YbbN; TPR repeat [structural motif]

sd00006
Location:748 → 776

TPR; TPR repeat [structural motif]