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cct5b chaperonin containing TCP1, subunit 5 (epsilon) b [ Xenopus laevis (African clawed frog) ]

Gene ID: 100036778, updated on 3-Dec-2023

Summary

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Gene symbol
cct5b
Gene description
chaperonin containing TCP1, subunit 5 (epsilon) b
Locus tag
XELAEV_18000429mg
See related
EnsemblRapid:ENSXLAG00005007870
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: 6L
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (76898716..76936092, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694955.1 (13077..50890, complement)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108719052 Neighboring gene Myb/SANT DNA binding domain containing 3 L homeolog Neighboring gene uncharacterized LOC108719053 Neighboring gene uncharacterized LOC121394661 Neighboring gene 5-methyltetrahydrofolate-homocysteine methyltransferase reductase L homeolog Neighboring gene uncharacterized LOC121394662

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
chaperonin containing TCP1, subunit 5 (epsilon) b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097075.1 → NP_001090544.1  chaperonin containing TCP1, subunit 5 (epsilon) b

    See identical proteins and their annotated locations for NP_001090544.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124890
    UniProtKB/TrEMBL
    A0A974GZ61, A0AUT4
    Related
    ENSXLAP00005022669.1, ENSXLAT00005023369.1
    Conserved Domains (2) summary
    cd03339
    Location:10 → 526
    TCP1_epsilon; TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins ...
    pfam00118
    Location:44 → 526
    Cpn60_TCP1; TCP-1/cpn60 chaperonin family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    76898716..76936092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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