ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ctr9provided by ZNC
Official Full Name: CTR9 homolog, Paf1/RNA polymerase II complex componentprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-3782
See related: Ensembl:ENSDARG00000009170 AllianceGenome:ZFIN:ZDB-GENE-030131-3782
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc54a06; wu:fc54a06
Summary: Predicted to enable RNA polymerase II complex binding activity. Involved in heart development. Acts upstream of or within neural crest cell development; pigmentation; and somitogenesis. Located in nucleus. Part of Cdc73/Paf1 complex. Orthologous to human CTR9 (CTR9 homolog, Paf1/RNA polymerase II complex component). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 23

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (66655729..66693712, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (66432081..66470064, complement)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA polymerase II complex binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in heart development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within neural crest cell development	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within pigmentation	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within somitogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in transcription elongation by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of Cdc73/Paf1 complex	IBA Inferred from Biological aspect of Ancestor more info
part_of Cdc73/Paf1 complex	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: RNA polymerase-associated protein CTR9 homolog

Names: Ctr9, Paf1/RNA polymerase II complex component, homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001083583.1 → NP_001077052.1 RNA polymerase-associated protein CTR9 homolog

See identical proteins and their annotated locations for NP_001077052.1

Status: PROVISIONAL

Source sequence(s)

AB286670

UniProtKB/TrEMBL

A0A8M1NCG2, A3KDM3

Related

ENSDARP00000016047.7, ENSDART00000021317.10

Conserved Domains (6) summary

TIGR02795
Location:310 → 414

tol_pal_ybgF; tol-pal system protein YbgF

sd00006
Location:501 → 525

TPR; TPR repeat [structural motif]

pfam13414
Location:165 → 228

TPR_11; TPR repeat

pfam13424
Location:498 → 563

TPR_12; Tetratricopeptide repeat

pfam14559
Location:691 → 750

TPR_19; Tetratricopeptide repeat

pfam14797
Location:1029 → 1153

SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex