btbd11b BTB (POZ) domain containing 11b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: btbd11bprovided by ZNC
Official Full Name: BTB (POZ) domain containing 11bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-050419-99
See related: Ensembl:ENSDARG00000063040 AllianceGenome:ZFIN:ZDB-GENE-050419-99
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: abtb3b; si:ch211-170d11.3
Summary: Predicted to enable protein heterodimerization activity. Predicted to be located in membrane. Orthologous to human ABTB3 (ankyrin repeat and BTB domain containing 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 18

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	18	NC_007129.7 (14951346..15101656, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	18	NC_007129.6 (14987187..15133102, complement)

Chromosome 18 - NC_007129.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables protein heterodimerization activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ankyrin repeat and BTB/POZ domain-containing protein 3-B

Names: BTB/POZ domain-containing protein 11-B; ankyrin repeat and BTB/POZ domain-containing protein BTBD11-B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001424048.1 → NP_001410977.1 ankyrin repeat and BTB/POZ domain-containing protein 3-B

Status: VALIDATED

Source sequence(s)

BX649610, CU929455

UniProtKB/TrEMBL

A0A8M1RJ87, F1QKI7

Related

ENSDARP00000086175.5, ENSDART00000091742.7

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007129.7 Reference GRCz11 Primary Assembly

Range

14951346..15101656 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021467774.2 → XP_021323449.1 ankyrin repeat and BTB/POZ domain-containing protein 3-B isoform X1

UniProtKB/Swiss-Prot

P0C7A6, Q1LVL9

UniProtKB/TrEMBL

A0A8M9PFR1

Conserved Domains (4) summary

cd00204
Location:506 → 625

ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...

sd00045
Location:514 → 540

ANK; ANK repeat [structural motif]

pfam00651
Location:789 → 896

BTB; BTB/POZ domain

cl25693
Location:187 → 275

H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...