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ACTB actin beta [ Equus caballus (horse) ]

Gene ID: 100033878, updated on 15-Aug-2024

Summary

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Gene symbol
ACTB
Gene description
actin beta
See related
Ensembl:ENSECAG00000015935
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See ACTB in Genome Data Viewer
Location:
chromosome: 13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 13 NC_009156.3 (4381682..4385073, complement)

Chromosome 13 - NC_009156.3Genomic Context describing neighboring genes Neighboring gene transcription initiation factor TFIID subunit 4-like Neighboring gene microRNA mir-9132 Neighboring gene uncharacterized LOC111776176 Neighboring gene fascin actin-bundling protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009156.3 Chromosome 13 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Quantitative measurement of equine cytokine mRNA expression by polymerase chain reaction using target-specific standard curves. Swiderski CE, et al. J Immunol Methods, 1999 Jan 1. PMID 10022382
  2. Determining ACTB, ATP5B and RPL32 as optimal reference genes for quantitative RT-PCR studies of cryopreserved stallion semen. Pérez-Rico A, et al. Anim Reprod Sci, 2014 Oct. PMID 25192831
  3. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. This study showed that beta-actin, L32 ribosomal protein, and ATP5B proteins were the most stabily expressed genes in cryopreserved horse semen.
    Title: Determining ACTB, ATP5B and RPL32 as optimal reference genes for quantitative RT-PCR studies of cryopreserved stallion semen.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of postsynaptic actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin, cytoplasmic 1
Names
beta actin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081838.1 → NP_001075307.1  actin, cytoplasmic 1

    See identical proteins and their annotated locations for NP_001075307.1

    Status: PROVISIONAL

    Source sequence(s)
    AF035774
    UniProtKB/Swiss-Prot
    P60708
    UniProtKB/TrEMBL
    A0A3Q2KTQ9
    Related
    ENSECAP00000013637.3, ENSECAT00000016856.4
    Conserved Domains (1) summary
    PTZ00281
    Location:1 → 375
    PTZ00281; actin; Provisional

RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009156.3 Reference EquCab3.0 Primary Assembly

    Range
    4381682..4385073 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023655002.1 → XP_023510770.1  actin, cytoplasmic 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2KTQ9
    Related
    ENSECAP00000080639.1, ENSECAT00000079541.1
    Conserved Domains (1) summary
    PTZ00281
    Location:1 → 375
    PTZ00281; actin; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P60708.1 GenPept UniProtKB/Swiss-Prot:P60708

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials