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LIN28B lin-28 homolog B [ Monodelphis domestica (gray short-tailed opossum) ]

Gene ID: 100028142, updated on 8-May-2024

Summary

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Gene symbol
LIN28B
Gene description
lin-28 homolog B
See related
EnsemblRapid:ENSMODG00000018035
Gene type
protein coding
RefSeq status
MODEL
Organism
Monodelphis domestica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
Orthologs
human mouse all
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Genomic context

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See LIN28B in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 2 NC_077228.1 (368561782..368702411)
103 previous assembly MonDom5 (GCF_000002295.2) 2 NC_008802.1 (368965317..369104869)

Chromosome 2 - NC_077228.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130457423 Neighboring gene HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 Neighboring gene uncharacterized LOC103092708 Neighboring gene popeye domain cAMP effector 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein lin-28 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mMonDom1.pri

Genomic

  1. NC_077228.1 Reference mMonDom1.pri

    Range
    368561782..368702411
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007484373.3 → XP_007484435.1  protein lin-28 homolog B isoform X1

    UniProtKB/TrEMBL
    A0A5F8H670, F6ZWF9
    Related
    ENSMODP00000054716.2, ENSMODT00000058088.2
    Conserved Domains (1) summary
    cd04458
    Location:40 → 110
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

  2. XM_007484375.3 → XP_007484437.1  protein lin-28 homolog B isoform X3

    UniProtKB/TrEMBL
    A0A5F8GZQ7, A0A5F8H670
    Related
    ENSMODP00000081121.1, ENSMODT00000140068.1
    Conserved Domains (1) summary
    cd04458
    Location:40 → 110
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

  3. XM_007484377.3 → XP_007484439.1  protein lin-28 homolog B isoform X5

    UniProtKB/TrEMBL
    A0A5F8GUV7, A0A5F8H670
    Conserved Domains (1) summary
    cd04458
    Location:40 → 110
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

  4. XM_056818628.1 → XP_056674606.1  protein lin-28 homolog B isoform X4

    UniProtKB/TrEMBL
    A0A5F8HHJ1

  5. XM_007484376.3 → XP_007484438.1  protein lin-28 homolog B isoform X4

    UniProtKB/TrEMBL
    A0A5F8HHJ1
    Related
    ENSMODP00000090847.1, ENSMODT00000109356.1
    Conserved Domains (1) summary
    cl09927
    Location:46 → 81
    S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...

  6. XM_007484374.3 → XP_007484436.1  protein lin-28 homolog B isoform X2

    UniProtKB/TrEMBL
    A0A5F8H670
    Related
    ENSMODP00000069742.1, ENSMODT00000150061.1
    Conserved Domains (1) summary
    cd04458
    Location:31 → 101
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

  7. XM_007484378.3 → XP_007484440.1  protein lin-28 homolog B isoform X6

    Conserved Domains (1) summary
    cl09927
    Location:35 → 71
    S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...
Nucleotide Protein
Heading Accession and Version

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