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CPT1A carnitine palmitoyltransferase 1A [ Equus caballus (horse) ]

Gene ID: 100009716, updated on 17-Aug-2024

Summary

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Official Symbol
CPT1Aprovided by VGNC
Official Full Name
carnitine palmitoyltransferase 1Aprovided by VGNC
Primary source
VGNC:VGNC:16839
See related
Ensembl:ENSECAG00000016852
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CPT1A in Genome Data Viewer
Location:
chromosome: 12
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 12 NC_009155.3 (31714177..31777133, complement)

Chromosome 12 - NC_009155.3Genomic Context describing neighboring genes Neighboring gene galanin and GMAP prepropeptide Neighboring gene testis expressed metallothionein like protein Neighboring gene uncharacterized LOC111775987 Neighboring gene mitochondrial ribosomal protein L21 Neighboring gene immunoglobulin mu DNA binding protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009155.3 Chromosome 12 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carnitine O-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carnitine O-palmitoyltransferase 1, liver isoform
Names
CPT I
CPT1-L
CPTI-L
succinyltransferase CPT1A
NP_001075277.1
XP_023509533.1
XP_023509534.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081808.1 → NP_001075277.1  carnitine O-palmitoyltransferase 1, liver isoform

    See identical proteins and their annotated locations for NP_001075277.1

    Status: PROVISIONAL

    Source sequence(s)
    AB188099
    UniProtKB/Swiss-Prot
    Q68Y62
    UniProtKB/TrEMBL
    A0A9L0SYV6
    Related
    ENSECAP00000081225.1, ENSECAT00000125916.1
    Conserved Domains (2) summary
    pfam00755
    Location:171 → 762
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
    pfam16484
    Location:1 → 46
    CPT_N; Carnitine O-palmitoyltransferase N-terminus

RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009155.3 Reference EquCab3.0 Primary Assembly

    Range
    31714177..31777133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023653765.1 → XP_023509533.1  carnitine O-palmitoyltransferase 1, liver isoform isoform X1

    UniProtKB/TrEMBL
    A0A3Q2H894, A0A9L0SYV6
    Related
    ENSECAP00000029446.2, ENSECAT00000052253.3
    Conserved Domains (2) summary
    pfam00755
    Location:224 → 811
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
    pfam16484
    Location:54 → 99
    CPT_N; Carnitine O-palmitoyltransferase N-terminus

  2. XM_023653766.1 → XP_023509534.1  carnitine O-palmitoyltransferase 1, liver isoform isoform X2

    UniProtKB/TrEMBL
    A0A5F5PXB1, F6SAW2
    Related
    ENSECAP00000053040.1, ENSECAT00000071711.2
    Conserved Domains (2) summary
    pfam00755
    Location:192 → 779
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
    pfam16484
    Location:22 → 67
    CPT_N; Carnitine O-palmitoyltransferase N-terminus
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q68Y62.1 GenPept UniProtKB/Swiss-Prot:Q68Y62

Gene LinkOut

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