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TRA-AGC8-1 tRNA-Ala (anticodon AGC) 8-1 [ Homo sapiens (human) ]

Gene ID: 100009604, updated on 10-Oct-2023

Summary

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Official Symbol
TRA-AGC8-1provided by HGNC
Official Full Name
tRNA-Ala (anticodon AGC) 8-1provided by HGNC
Primary source
HGNC:HGNC:33254
See related
AllianceGenome:HGNC:33254
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAA3
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Genomic context

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Location:
2p23.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (27051214..27051286)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (27092901..27092973)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (27274082..27274154)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11279 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15484 Neighboring gene Sharpr-MPRA regulatory region 11838 Neighboring gene AGBL5 antisense RNA 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:27274291-27274790 Neighboring gene tRNA-Tyr (anticodon GTA) 2-1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11281 Neighboring gene AGBL carboxypeptidase 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15486 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11282 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15487 Neighboring gene oligosaccharyltransferase complex subunit 4, non-catalytic Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:27300904-27301682 Neighboring gene elastin microfibril interfacer 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15488 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15489 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11283 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11284

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two human tRNA(Ala) families are recognized by autoantibodies in polymyositis sera. Bunn CC, et al. Mol Biol Med, 1987 Feb. PMID 3613974
  2. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Ala (AGC) 8-1
  • transfer RNA alanine 3 (anticodon AGC)
  • transfer RNA alanine 3 (anticodon UGC)
  • transfer RNA-Ala (AGC) 8-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    27051214..27051286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    27092901..27092973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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