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SELP selectin P [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100009534, updated on 8-Mar-2024

Summary

Gene symbol
SELP
Gene description
selectin P
See related
Ensembl:ENSOCUG00000016477
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Orthologs
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Genomic context

See SELP in Genome Data Viewer
Location:
chromosome: 13
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 13 NC_067386.1 (22037307..22079389, complement)

Chromosome 13 - NC_067386.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 19 member 2 Neighboring gene coagulation factor V Neighboring gene selectin L Neighboring gene selectin E

Genomic regions, transcripts, and products

Genomic Sequence:
NC_067386.1 Chromosome 13 Reference UM_NZW_1.0 Primary Assembly

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oligosaccharide binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables sialic acid binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in leukocyte tethering or rolling IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in response to cytokine IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
P-selectin
Names
selectin P (granule membrane protein 140kDa, antigen CD62)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001361473.1NP_001348402.1  P-selectin

    Status: VALIDATED

    Source sequence(s)
    GBCI01255874, GBCM01048565
    UniProtKB/TrEMBL
    G1TBQ3
    Conserved Domains (4) summary
    cd00033
    Location:200258
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd00054
    Location:168195
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl02432
    Location:42160
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl27761
    Location:279505
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067386.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    22037307..22079389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008264081.3XP_008262303.1  P-selectin isoform X1

    Conserved Domains (4) summary
    cd00033
    Location:510568
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PHA02927
    Location:443699
    PHA02927; secreted complement-binding protein; Provisional
    cd00054
    Location:168195
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl02432
    Location:42160
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001082755.1: Suppressed sequence

    Description
    NM_001082755.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.