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SFTPA1 surfactant protein A1 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100009044, updated on 9-Nov-2023

Summary

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Gene symbol
SFTPA1
Gene description
surfactant protein A1
See related
Ensembl:ENSOCUG00000016669
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
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Genomic context

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See SFTPA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) Unplaced Scaffold NW_026259167.1 (307528..312392, complement)

NW_026259167.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103347245 Neighboring gene uncharacterized LOC127487444 Neighboring gene transmembrane protein 254 Neighboring gene uncharacterized LOC127487445 Neighboring gene surfactant protein D Neighboring gene uncharacterized LOC108178902 Neighboring gene methionine adenosyltransferase 1A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026259167 Unplaced Scaffold Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of enhancers in the 5'-flanking region of the rabbit surfactant protein A (SP-A) gene and characterization of their binding proteins. Gao E, et al. J Biol Chem, 1993 Sep 15. PMID 8366111
  2. The major apoprotein of rabbit pulmonary surfactant. Elucidation of primary sequence and cyclic AMP and developmental regulation. Boggaram V, et al. J Biol Chem, 1988 Feb 25. PMID 2830270
  3. Rabbit lung surfactant protein A gene: identification of a lung-specific DNase I hypersensitive site. Chen Q, et al. Am J Physiol, 1992 Jun. PMID 1616051

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pulmonary surfactant-associated protein A
Names
PSAP
PSP-A
SP-A
surfactant, pulmonary-associated protein A1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001082229.1 → NP_001075698.1  pulmonary surfactant-associated protein A precursor

    See identical proteins and their annotated locations for NP_001075698.1

    Status: PROVISIONAL

    Source sequence(s)
    J03542
    UniProtKB/Swiss-Prot
    P12842
    Conserved Domains (2) summary
    cd03591
    Location:135 → 247
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:27 → 99
    Collagen; Collagen triple helix repeat (20 copies)

RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NW_026259167.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    307528..312392 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P12842.1 GenPept UniProtKB/Swiss-Prot:P12842

Gene LinkOut

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