U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

VCAM1 vascular cell adhesion molecule 1 [ Oryctolagus cuniculus (rabbit) ]

Gene ID: 100008901, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
VCAM1
Gene description
vascular cell adhesion molecule 1
See related
Ensembl:ENSOCUG00000011697
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryctolagus cuniculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
Also known as
VCAM-1
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See VCAM1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 13 NC_067386.1 (63660354..63681708, complement)

Chromosome 13 - NC_067386.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 30 member 7 Neighboring gene KATNB1-like protein 1 Neighboring gene exostosin like glycosyltransferase 2 Neighboring gene uncharacterized LOC103350110 Neighboring gene G protein-coupled receptor 88

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_067386.1 Chromosome 13 Reference UM_NZW_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Inhibition of basal and interleukin-1-induced VCAM-1 expression by phospholipid hydroperoxide glutathione peroxidase and 15-lipoxygenase in rabbit aortic smooth muscle cells. Banning A, et al. Free Radic Biol Med, 2004 Jan 15. PMID 14744625
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
vascular cell adhesion protein 1
Names
adhesion molecule VCAM-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001082152.1 → NP_001075621.1  vascular cell adhesion protein 1 precursor

    See identical proteins and their annotated locations for NP_001075621.1

    Status: PROVISIONAL

    Source sequence(s)
    AY212510
    UniProtKB/TrEMBL
    A0A5F9DFM7, Q865F2
    Related
    ENSOCUP00000044142.1, ENSOCUT00000059470.1
    Conserved Domains (7) summary
    cd07689
    Location:116 → 214
    Ig2_VCAM-1; Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins
    smart00408
    Location:238 → 298
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:232 → 308
    IG_like; Immunoglobulin like
    pfam07679
    Location:26 → 112
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:518 → 596
    Ig_2; Immunoglobulin domain
    pfam13927
    Location:608 → 672
    Ig_3; Immunoglobulin domain
    cl11960
    Location:29 → 98
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UM_NZW_1.0 Primary Assembly

Genomic

  1. NC_067386.1 Reference UM_NZW_1.0 Primary Assembly

    Range
    63660354..63681708 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008263958.3 → XP_008262180.2  vascular cell adhesion protein 1 isoform X1

  2. XM_008263959.3 → XP_008262181.2  vascular cell adhesion protein 1 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.