U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

fam20cl family with sequence similarity 20 member C, like [ Danio rerio (zebrafish) ]

Gene ID: 100007251, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
fam20clprovided by ZNC
Official Full Name
family with sequence similarity 20 member C, likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070705-319
See related
Ensembl:ENSDARG00000060325 AllianceGenome:ZFIN:ZDB-GENE-070705-319
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-4c23.6; si:dkey-179j5.2
Summary
Predicted to enable phosphotransferase activity, alcohol group as acceptor. Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in membrane. Predicted to colocalize with Golgi apparatus. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See fam20cl in Genome Data Viewer
Location:
chromosome: 22
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (24952799..24967348, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (24925175..24939856, complement)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene sialoadhesin Neighboring gene sialoadhesin Neighboring gene dynein, axonemal, light chain 4b Neighboring gene si:dkey-179j5.5

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Revealing genes associated with vitellogenesis in the liver of the zebrafish (Danio rerio) by transcriptome profiling. Levi L, et al. BMC Genomics, 2009 Mar 31. PMID 19335895, Free PMC Article
  2. Zebrafish whole-adult-organism chemogenomics for large-scale predictive and discovery chemical biology. Lam SH, et al. PLoS Genet, 2008 Jul 11. PMID 18618001, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphotransferase activity, alcohol group as acceptor IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to estrogen stimulus IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in enamel mineralization IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
colocalizes_with Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
extracellular serine/threonine protein kinase FAM20C
Names
fam20c3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    24952799..24967348 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001345721.8 → XP_001345757.3  extracellular serine/threonine protein kinase FAM20C isoform X1

    UniProtKB/TrEMBL
    A0A8M9Q7G7, Q1MTC0, X1WD56
    Related
    ENSDARP00000128153.3, ENSDART00000153490.3
    Conserved Domains (1) summary
    pfam06702
    Location:276 → 496
    Fam20C; Golgi casein kinase, C-terminal, Fam20

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395108.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    306145..320694 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473505.2 → XP_021329180.1  extracellular serine/threonine protein kinase FAM20C isoform X1

    UniProtKB/TrEMBL
    A0A8M9Q7G7, Q1MTC0, X1WD56
    Conserved Domains (1) summary
    pfam06702
    Location:276 → 496
    Fam20C; Golgi casein kinase, C-terminal, Fam20

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395353.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    116315..126347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474481.2 → XP_021330156.2  extracellular serine/threonine protein kinase FAM20C isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.