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nptxrb neuronal pentraxin receptor b [ Danio rerio (zebrafish) ]

Gene ID: 100005257, updated on 2-Nov-2024

Summary

Official Symbol
nptxrbprovided by ZNC
Official Full Name
neuronal pentraxin receptor bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050208-595
See related
Ensembl:ENSDARG00000053375 AllianceGenome:ZFIN:ZDB-GENE-050208-595
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
nptxr; zgc:158178; si:dkeyp-20e4.1
Summary
Orthologous to human NPTXR (neuronal pentraxin receptor). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See nptxrb in Genome Data Viewer
Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (25024235..25033038, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (24996611..25005414, complement)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488938 Neighboring gene uncharacterized LOC795984 Neighboring gene polymerase (RNA) III (DNA directed) polypeptide F Neighboring gene uncharacterized LOC137488939

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Clone Names

  • MGC158178

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
neuronal pentraxin receptor b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044314.2NP_001037779.2  neuronal pentraxin receptor b

    Status: VALIDATED

    Source sequence(s)
    AL929032, BX294165
    Related
    ENSDARP00000107185.2, ENSDART00000124220.3

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    25024235..25033038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395108.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    377581..377862 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395353.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    189450..197694 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)