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stard13b StAR related lipid transfer domain containing 13b [ Danio rerio (zebrafish) ]

Gene ID: 100005208, updated on 12-Sep-2024

Summary

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Official Symbol
stard13bprovided by ZNC
Official Full Name
StAR related lipid transfer domain containing 13bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050506-146
See related
Ensembl:ENSDARG00000098954 AllianceGenome:ZFIN:ZDB-GENE-050506-146
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7147988
Summary
Predicted to enable GTPase activator activity. Predicted to be involved in actin cytoskeleton organization and regulation of Rho protein signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Orthologous to human STARD13 (StAR related lipid transfer domain containing 13). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See stard13b in Genome Data Viewer
Location:
chromosome: 15
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (33467531..33640900, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (33609552..33782924, complement)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene neurobeachin b Neighboring gene mab-21-like 1 Neighboring gene uncharacterized LOC110437911 Neighboring gene histone deacetylase 12 Neighboring gene tRNA methyltransferase 9B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Genomic organization and evolution of olfactory receptors and trace amine-associated receptors in channel catfish, Ictalurus punctatus. Gao S, et al. Biochim Biophys Acta Gen Subj, 2017 Mar. PMID 27773705
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTPase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
  
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within lipid transport IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of Rho protein signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
stAR-related lipid transfer protein 13
Names
StAR-related lipid transfer (START) domain containing 13b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    33467531..33640900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005157638.5 → XP_005157695.1  stAR-related lipid transfer protein 13 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B4J1, E7F8B8
    Related
    ENSDARP00000135603.1, ENSDART00000167705.2
    Conserved Domains (4) summary
    cd09592
    Location:419 → 482
    SAM_DLC2; SAM domain of STARD13-like subfamily
    smart00454
    Location:423 → 482
    SAM; Sterile alpha motif
    cd04375
    Location:1023 → 1243
    RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
    cl14643
    Location:1275 → 1478
    SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

  2. XM_005157640.5 → XP_005157697.1  stAR-related lipid transfer protein 13 isoform X3

    UniProtKB/TrEMBL
    A0A8M2B4H2
    Conserved Domains (4) summary
    cd09592
    Location:42 → 105
    SAM_DLC2; SAM domain of STARD13-like subfamily
    smart00454
    Location:46 → 105
    SAM; Sterile alpha motif
    cd04375
    Location:646 → 866
    RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
    cl14643
    Location:898 → 1101
    SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

  3. XM_001340078.9 → XP_001340114.1  stAR-related lipid transfer protein 13 isoform X2

    UniProtKB/TrEMBL
    A0A2R8QSF6, A0A8M1Q1U6
    Related
    ENSDARP00000156207.1, ENSDART00000187646.1
    Conserved Domains (4) summary
    cd09592
    Location:55 → 118
    SAM_DLC2; SAM domain of STARD13-like subfamily
    smart00454
    Location:59 → 118
    SAM; Sterile alpha motif
    cd04375
    Location:659 → 879
    RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
    cl14643
    Location:911 → 1114
    SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

  4. XM_005157641.5 → XP_005157698.1  stAR-related lipid transfer protein 13 isoform X4

    UniProtKB/TrEMBL
    A0A8M2B3U3
    Conserved Domains (4) summary
    cd09592
    Location:5 → 68
    SAM_DLC2; SAM domain of STARD13-like subfamily
    smart00454
    Location:3 → 68
    SAM; Sterile alpha motif
    cd04375
    Location:609 → 829
    RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
    cl14643
    Location:861 → 1064
    SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

  5. XM_009291826.4 → XP_009290101.1  stAR-related lipid transfer protein 13 isoform X5

    UniProtKB/TrEMBL
    A0A8M3AQ23
    Conserved Domains (2) summary
    cd04375
    Location:543 → 763
    RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
    cl14643
    Location:795 → 998
    SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily
Nucleotide Protein Strain
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