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ankrd40 ankyrin repeat domain 40 [ Danio rerio (zebrafish) ]

Gene ID: 100005118, updated on 2-Nov-2024

Summary

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Official Symbol
ankrd40provided by ZNC
Official Full Name
ankyrin repeat domain 40provided by ZNC
Primary source
ZFIN:ZDB-GENE-120612-2
See related
Ensembl:ENSDARG00000076490 AllianceGenome:ZFIN:ZDB-GENE-120612-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to several human genes including ANKRD40 (ankyrin repeat domain 40). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See ankrd40 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (18062886..18080827)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (17913134..17930885)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene hydroxysteroid (17-beta) dehydrogenase 1 Neighboring gene methyltransferase like 26 Neighboring gene uncharacterized LOC137490521 Neighboring gene info WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2a Neighboring gene transducer of ERBB2, 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Zebrafish Collagen Type I: Molecular and Biochemical Characterization of the Major Structural Protein in Bone and Skin. Gistelinck C, et al. Sci Rep, 2016 Feb 15. PMID 26876635, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    18062886..18080827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001341341.9 → XP_001341377.1  ankyrin repeat domain-containing protein 40

    UniProtKB/TrEMBL
    A0A8M1PZH4, E7FE71
    Related
    ENSDARP00000100846.2, ENSDART00000112384.4
    Conserved Domains (4) summary
    cd00204
    Location:7 → 93
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:48 → 83
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:14 → 64
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:14 → 40
    ANK; ANK repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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