arf6b ADP-ribosylation factor 6b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: arf6bprovided by ZNC
Official Full Name: ADP-ribosylation factor 6bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-9056
See related: Ensembl:ENSDARG00000052928 AllianceGenome:ZFIN:ZDB-GENE-030131-9056
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: wu:fa98a01; zgc:172028
Summary: Predicted to enable G protein activity and GTP binding activity. Acts upstream of or within several processes, including epiboly involved in gastrulation with mouth forming second; intrahepatic bile duct development; and regulation of apoptotic process. Is expressed in intestinal bulb; liver; and pancreas. Orthologous to human ARF6 (ADP ribosylation factor 6). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 17

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	17	NC_007128.7 (45731865..45734231, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	17	NC_007128.6 (45748613..45750979, complement)

Chromosome 17 - NC_007128.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

fa98a01 (e-PCR)
- UniSTS:188930

fc89b05.y1 (e-PCR)
- UniSTS:194755

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables G protein activity	IEA Inferred from Electronic Annotation more info
enables GTP binding	IEA Inferred from Electronic Annotation more info
enables GTPase activity	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within epiboly involved in gastrulation with mouth forming second	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within intrahepatic bile duct development	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within regulation of neuron apoptotic process	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within regulation of oligodendrocyte apoptotic process	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within spinal cord development	IGI Inferred from Genetic Interaction more info	PubMed

General protein information

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Preferred Names: ADP-ribosylation factor 6b

NP_001154847.1

EC 3.6.5.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.