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si:ch73-111k22.3 si:ch73-111k22.3 [ Danio rerio (zebrafish) ]

Gene ID: 100003104, updated on 28-Oct-2024

Summary

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Official Symbol
si:ch73-111k22.3provided by ZNC
Official Full Name
si:ch73-111k22.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-141212-371
See related
Ensembl:ENSDARG00000103492 AllianceGenome:ZFIN:ZDB-GENE-141212-371
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be involved in endosome organization; receptor recycling; and retrograde transport, endosome to Golgi. Predicted to be active in early endosome; recycling endosome; and trans-Golgi network. [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
all
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Genomic context

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See si:ch73-111k22.3 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (3913417..3915770, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (4116131..4118483)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene exostosin-1 Neighboring gene uncharacterized LOC137488608 Neighboring gene cnksr family member 3 Neighboring gene si:ch73-111k22.2 Neighboring gene C-type lectin domain containing 11A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in endosome organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in receptor recycling IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in retrograde transport, endosome to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in early endosome IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in recycling endosome IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
pleckstrin homology-like domain-containing protein
Names
differentially expressed in FDCP 6 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386283.1 → NP_001373212.1  pleckstrin homology-like domain-containing protein

    Status: VALIDATED

    Source sequence(s)
    CU929133
    UniProtKB/TrEMBL
    A0A8M1PV46
    Related
    ENSDARP00000135737.1, ENSDART00000159322.2
    Conserved Domains (1) summary
    cl17171
    Location:21 → 105
    PH-like; Pleckstrin homology-like domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    3913417..3915770 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials