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bri3 brain protein I3 [ Danio rerio (zebrafish) ]

Gene ID: 100002236, updated on 17-Aug-2024

Summary

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Official Symbol
bri3provided by ZNC
Official Full Name
brain protein I3provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3038
See related
Ensembl:ENSDARG00000086332 AllianceGenome:ZFIN:ZDB-GENE-030131-3038
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc25e01; fc63g12; wu:fc25e01; wu:fc63g12
Summary
Predicted to be located in lysosomal membrane and perinuclear region of cytoplasm. Predicted to be integral component of membrane. Orthologous to human BRI3 (brain protein I3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See bri3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (61391580..61398936)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (61158992..61166348)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene zinc finger protein 271-like Neighboring gene BAR/IMD domain containing adaptor protein 2 like 1b Neighboring gene gastrula zinc finger protein XlCGF57.1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Reduced synaptic density and deficient locomotor response in neuronal activity-regulated pentraxin 2a mutant zebrafish. Elbaz I, et al. FASEB J, 2015 Apr. PMID 25466900
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
brain protein I3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001200039.1 → NP_001186968.1  brain protein I3

    Status: VALIDATED

    Source sequence(s)
    BC066460, CU464205
    UniProtKB/TrEMBL
    A0A8M1NWM0, E7FAC9
    Related
    ENSDARP00000108026.1, ENSDART00000126417.3
    Conserved Domains (1) summary
    pfam10164
    Location:13 → 129
    DUF2367; Uncharacterized conserved protein (DUF2367)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    61391580..61398936
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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