stxbp6l syntaxin binding protein 6 (amisyn), like [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: stxbp6lprovided by ZNC
Official Full Name: syntaxin binding protein 6 (amisyn), likeprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040724-16
See related: Ensembl:ENSDARG00000028354 AllianceGenome:ZFIN:ZDB-GENE-040724-16
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:110123; si:dkey-29m11.7; si:dkey-63j12.1
Summary: Predicted to enable phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to be part of exocyst. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 20

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (9828967..9848293)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (9839927..9861053)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables phosphatidylinositol-4,5-bisphosphate binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in Golgi to plasma membrane transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in exocytosis	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of exocyst	IBA Inferred from Biological aspect of Ancestor more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: syntaxin binding protein 6 (amisyn), like

Names: syntaxin binding protein 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001020738.2 → NP_001018574.2 syntaxin binding protein 6 (amisyn), like

See identical proteins and their annotated locations for NP_001018574.2

Status: PROVISIONAL

Source sequence(s)

AL954679

UniProtKB/TrEMBL

A0A8M1N6F3, E7FEI5, Q5VSD0

Related

ENSDARP00000075137.5, ENSDART00000080691.6

Conserved Domains (2) summary

cd14681
Location:2 → 130

PH-STXBP6; PH-like domain of Syntaxin binding protein 6

cl22856
Location:227 → 276

SNARE; SNARE motif

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007131.7 Reference GRCz11 Primary Assembly

Range

9828967..9848293

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021468334.2 → XP_021324009.1 syntaxin binding protein 6 (amisyn), like isoform X1

UniProtKB/TrEMBL

A0A0R4IU85, A0A8M9PH32

Related

ENSDARP00000138234.1, ENSDART00000160480.3

Conserved Domains (2) summary

cd14681
Location:2 → 130

PH-STXBP6; PH-like domain of Syntaxin binding protein 6

cl22856
Location:228 → 277

SNARE; SNARE motif