U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

si:ch211-212k18.8 si:ch211-212k18.8 [ Danio rerio (zebrafish) ]

Gene ID: 100001422, updated on 17-Sep-2024

Summary

Official Symbol
si:ch211-212k18.8provided by ZNC
Official Full Name
si:ch211-212k18.8provided by ZNC
Primary source
ZFIN:ZDB-GENE-041111-14
See related
Ensembl:ENSDARG00000086421 AllianceGenome:ZFIN:ZDB-GENE-041111-14
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7136729
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See si:ch211-212k18.8 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (19495905..19500326)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (19243883..19248375)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene si:ch211-212k18.6 Neighboring gene CD68 molecule Neighboring gene si:ch211-212k18.9 Neighboring gene mannosidase, alpha, class 2B, member 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein LOC100001422

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386716.1NP_001373645.1  uncharacterized protein LOC100001422 isoform 1

    Status: VALIDATED

    Source sequence(s)
    CR352328
    UniProtKB/TrEMBL
    A0A8M1PS59
    Related
    ENSDARP00000151038.1, ENSDART00000180514.1
  2. NM_001386717.1NP_001373646.1  uncharacterized protein LOC100001422 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CR352328
    UniProtKB/TrEMBL
    A0A8M9QHJ9, E7EYY2
    Related
    ENSDARP00000104578.1, ENSDART00000125584.4

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    19495905..19500326
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394683.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    218112..222533
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)