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zbed4 zinc finger, BED-type containing 4 [ Danio rerio (zebrafish) ]

Gene ID: 100000808, updated on 2-Nov-2024

Summary

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Official Symbol
zbed4provided by ZNC
Official Full Name
zinc finger, BED-type containing 4provided by ZNC
Primary source
ZFIN:ZDB-GENE-041210-305
See related
Ensembl:ENSDARG00000024306 AllianceGenome:ZFIN:ZDB-GENE-041210-305
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-164m14.5
Summary
Predicted to enable DNA binding activity; metal ion binding activity; and protein dimerization activity. Predicted to be located in nucleus. Orthologous to human ZBED4 (zinc finger BED-type containing 4). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See zbed4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (27112397..27129689, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (27123109..27140406, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene cysteine-rich with EGF-like domains 2 Neighboring gene ALG12 alpha-1,6-mannosyltransferase Neighboring gene bromodomain containing 1a Neighboring gene uncharacterized LOC137491561

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger BED domain-containing protein 4
Names
zinc finger, BED domain containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001082941.1 → NP_001076410.1  zinc finger BED domain-containing protein 4

    See identical proteins and their annotated locations for NP_001076410.1

    Status: PROVISIONAL

    Source sequence(s)
    CR751234
    UniProtKB/TrEMBL
    A0A8M1NC33, Q5RFV1
    Related
    ENSDARP00000033717.4, ENSDART00000034534.6
    Conserved Domains (3) summary
    smart00614
    Location:538 → 586
    ZnF_BED; BED zinc finger
    pfam02892
    Location:205 → 253
    zf-BED; BED zinc finger
    pfam05699
    Location:1165 → 1242
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    27112397..27129689 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005168533.5 → XP_005168590.1  zinc finger BED domain-containing protein 4 isoform X1

    See identical proteins and their annotated locations for XP_005168590.1

    UniProtKB/TrEMBL
    A0A8M1NC33, Q5RFV1
    Related
    ENSDARP00000115355.1, ENSDART00000131240.3
    Conserved Domains (3) summary
    smart00614
    Location:538 → 586
    ZnF_BED; BED zinc finger
    pfam02892
    Location:205 → 253
    zf-BED; BED zinc finger
    pfam05699
    Location:1165 → 1242
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394558.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    74293..78042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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