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Items: 1 to 20 of 302

1.

The effects of periodic restricted feeding on Rhesus Macaques

(Submitter supplied) Dietary restriction has shown benefits in physiological, metabolic, and molecular signatures associated with aging. In mice, periodic dietary restriction, that accompanies cyclical periods of reduced calories, mitigates aging phenotypes, yet the effects of this periodic restriction in higher order, genetically heterogenous mammals, have not been investigated. Reducing caloric intake in middle-aged Rhesus Macaques for four days followed by ad libitum eating for ten days, repeated for six cycles, led to significant changes in body composition, metabolome, and microbiome of the restricted monkeys compared to their ad libitum fed (age and sex matched) controls. more...
Organism:
gut metagenome
Type:
Other
Platform:
GPL33529
140 Samples
Download data: TXT
Series
Accession:
GSE235769
ID:
200235769
2.

Interaction between the microbiome and the severity of diversion colitis after low anterior resection of rectal cancer

(Submitter supplied) Background:Diversion colitis (DC) is a non-specific inflammation in the intestinal mucosa with colonic dysfunction after low anterior resection of rectal cancer. It is newly proposed in recent years. With the gradual prolongation time of the ileostomy status, the condition of DC may become increasingly severe. However, the corresponding pathogenesis of DC has not been clarified yet. Methods:Clinical information were collected from patients with low rectal cancer admitted to the Department of Anorectal Surgery, Changzheng Hospital, from April 2017 to April 2019. more...
Organism:
gut metagenome
Type:
Other
Platform:
GPL29420
40 Samples
Download data: XLSX
Series
Accession:
GSE226706
ID:
200226706
3.

Is intestinal bacterial diversity enhanced by trans-species spread in the mixed-species flock of hooded crane (Grus monacha) and bean goose (Anser fabalis) wintering in the lower and middle Yangtze River floodplain?

(Submitter supplied) Illumina high-throughput sequencing was used to analyse the intestinal bacteria of these two species during different wintering periods at Shengjin Lake. We tested whether contact time enhances the trans-species spread of gut bacteria. Our results indicate that although intestinal microflora of hooded crane and the bean goose were different, direct or indirect contact in the mixed-species flock caused the spread of gut bacteria trans-species, and a very high proportion of common pathogens among these two hosts.
Organism:
gut metagenome
Type:
Expression profiling by high throughput sequencing
Platform:
GPL29420
111 Samples
Download data: TXT
Series
Accession:
GSE161577
ID:
200161577
4.

Detection of antibiotic resistance genes in human gut microbiota

(Submitter supplied) We used a DNA microarray chip covering 369 resistance types to investigate the relation of antibiotic resistance gene diversity with humans’ age. Metagenomic DNA from fecal samples of 123 healthy volunteers of four different age groups, i.e. pre-school Children (CH), School Children (SC), High School Students (HSS) and Adults (AD) were used for hybridization. The results showed that 80 different gene types were recovered from the 123 individuals gut microbiota, among which 25 were present in CH, 37 in SC, 58 in HSS and 72 in AD. more...
Organism:
human gut metagenome; gut metagenome
Type:
Genome variation profiling by array
Platform:
GPL18168
123 Samples
Download data: PAIR
Series
Accession:
GSE54070
ID:
200054070
5.

Metatranscriptomics provides insight into the physiologies of the digestive tract symbionts within the medicinal leech, Hirudo verbana

(Submitter supplied) Here, we report the use of Illumina RNA-Seq for investigating the physiology of the digestive-tract microbiome within the medicinal leech, Hirudo verbana. About 12 million cDNA reads were mapped against the genomes of the two dominant members of this simple microbiome. Results suggested that the most abundant, yet uncultured Rikenella-like bacterium forages host mucin glycans and ferments the carbohydrates to acetate that is secreted into the environment. more...
Organism:
Hirudo verbana; gut metagenome
Type:
Expression profiling by high throughput sequencing
Platform:
GPL10862
2 Samples
Download data: TXT
Series
Accession:
GSE23786
ID:
200023786
6.

Illumina HiSeq 2500 (gut metagenome)

Organism:
gut metagenome
1 Series
140 Samples
Download data
Platform
Accession:
GPL33529
ID:
100033529
7.

Illumina MiSeq (gut metagenome)

Organism:
gut metagenome
2 Series
151 Samples
Download data
Platform
Accession:
GPL29420
ID:
100029420
8.

NimbleGen gut microbiome array [091124_micro_BZ_EXP_HX12]

(Submitter supplied) NimbleGen design name: 091124_micro_BZ_EXP_HX12, NimbleGen design ID: 10987 An detection design for 2916 antibiotic resistance genes from ARDB with twelve 60-mer probe pairs (PM/MM) per gene. Each probe is replicated 3 times. The design includes random GC control probes. The .ndf and .ngd files are linked below as supplementary files. However, please note that not all genes in the ngd file are represented in the platform data table. more...
Organism:
gut metagenome
1 Series
123 Samples
Download data: NCD, NDF, NGD
Platform
Accession:
GPL18168
ID:
100018168
9.

Illumina Genome Analyzer (gut metagenome; Hirudo verbana)

Organism:
Hirudo verbana; gut metagenome
1 Series
2 Samples
Download data
Platform
Accession:
GPL10862
ID:
100010862
10.

Jmat-C6D8-MRI_S134

Organism:
gut metagenome
Source name:
fecal
Platform:
GPL33529
Series:
GSE235769
Download data
Sample
Accession:
GSM7509194
ID:
307509194
11.

JMat-baseline-ZJ55_S19

Organism:
gut metagenome
Source name:
fecal
Platform:
GPL33529
Series:
GSE235769
Download data
Sample
Accession:
GSM7509193
ID:
307509193
12.

JMat-baseline-ZJ51_S21

Organism:
gut metagenome
Source name:
fecal
Platform:
GPL33529
Series:
GSE235769
Download data
Sample
Accession:
GSM7509192
ID:
307509192
13.

JMat-baseline-ZF77_S16

Organism:
gut metagenome
Source name:
fecal
Platform:
GPL33529
Series:
GSE235769
Download data
Sample
Accession:
GSM7509191
ID:
307509191
14.

JMat-baseline-ZF36_S12

Organism:
gut metagenome
Source name:
fecal
Platform:
GPL33529
Series:
GSE235769
Download data
Sample
Accession:
GSM7509190
ID:
307509190
15.

JMat-baseline-ZE26_S3

Organism:
gut metagenome
Source name:
fecal
Platform:
GPL33529
Series:
GSE235769
Download data
Sample
Accession:
GSM7509189
ID:
307509189
16.

JMat-baseline-ZA64_S18

Organism:
gut metagenome
Source name:
fecal
Platform:
GPL33529
Series:
GSE235769
Download data
Sample
Accession:
GSM7509188
ID:
307509188
17.

JMat-baseline-ZA49_S23

Organism:
gut metagenome
Source name:
fecal
Platform:
GPL33529
Series:
GSE235769
Download data
Sample
Accession:
GSM7509187
ID:
307509187
18.

JMat-baseline-T75_S5

Organism:
gut metagenome
Source name:
fecal
Platform:
GPL33529
Series:
GSE235769
Download data
Sample
Accession:
GSM7509186
ID:
307509186
19.

JMat-baseline-T19_S6

Organism:
gut metagenome
Source name:
fecal
Platform:
GPL33529
Series:
GSE235769
Download data
Sample
Accession:
GSM7509185
ID:
307509185
20.

JMat-baseline-RQ6709_S15

Organism:
gut metagenome
Source name:
fecal
Platform:
GPL33529
Series:
GSE235769
Download data
Sample
Accession:
GSM7509184
ID:
307509184
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