GEO DataSets

(Submitter supplied) To further clarify the differences in the potential regulatory mechanisms of cold tolerance between wild and cultivated tomatoes, we subjected cold-sensitive cultivated tomato (Solanum lycopersicum) Ailsa Craig (AC) and cold-tolerant wild tomato (S. habrochaites) LA1777 to cold stress for 6 h, and performed ATAC-Seq and RNA-Seq, respectively.

Organism:

Solanum lycopersicum; Solanum habrochaites

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platforms:

GPL27957 GPL34161

8 Samples

Download data: BW

(Submitter supplied) Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goal of this study is genome wide association mapping for cold tolerance and yield studies in tomato (Solanum spp.) by phenotyping the genotypes under six diffrent temporal arrangments. Also for conducting quantitative reverse transcription polymerase chain reaction (qRT–PCR) assay of cold tolerant genes.

Organism:

Solanum chilense; Solanum lycopersicum var. cerasiforme; Solanum lycopersicum; Solanum habrochaites; Solanum peruvianum; Solanum pimpinellifolium

Type:

Genome variation profiling by high throughput sequencing

6 related Platforms

50 Samples

Download data: VCF

(Submitter supplied) The changes of small RNA profile have been studied in tomato and wild tomato plants to understand the host reponse to the infection of a non-coding viral RNA infection.

Organism:

Solanum lycopersicum; Solanum lycopersicum x Solanum habrochaites; Solanum habrochaites

Type:

Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL23877 GPL19694 GPL23878

8 Samples

Download data: CSV

(Submitter supplied) A comparative study ware made to know the Early Blight resistance mechanism between resistant and susceptible plants at vegetative stage. Transcriptional changes during compatible and resistant reaction between A. solani and tomato genotypes have been identified using Affymetrix tomato gene chips. Results were confirmed by reverse transcription-polymerase chain reaction with the samples collected after 24hrs of inoculation from inoculated and control susceptible and resistant genotypes. more...

Organism:

Solanum lycopersicum; Solanum habrochaites

Type:

Expression profiling by array

Platform:

GPL4741

12 Samples

Download data: CEL

(Submitter supplied) To identify tomato miRNAs involved in chilling response, two small RNA libraries and two degradome libraries from chilling-treated(4°C/4°C for 1h，4h, 8h, 12h, 24h and 48h) and non-chilling-treated (25°C/20°C for 1h，4h, 8h, 12h, 24h and 48h)leaves of LA1777’ (S. habrochaites) seedlings were constructed. A total of 4342604 and 7231609 clean reads were obtained by high-throughput sequencing of the two libraries, respectively. more...

Organism:

Solanum habrochaites

Type:

Non-coding RNA profiling by high throughput sequencing; Other

Platform:

GPL18655

4 Samples

Download data: TXT

(Submitter supplied) RNA-seq of seedlings of four tomato species Solanum habrochaites, Solanum lycopersicum, Solanum pimpinelliolium, and Solanum pennellii. An additional panel of samples include many tissues from Solanum lycopersicum and Solanum pennellii in two light conditions

Organism:

Solanum pimpinellifolium; Solanum lycopersicum; Solanum pennellii; Solanum habrochaites

Type:

Expression profiling by high throughput sequencing

4 related Platforms

52 Samples

Download data: TXT